Genetic Diversity, Population Structure, and Linkage Disequilibrium of a Core Collection of Ziziphus jujuba Assessed with Genome-wide SNPs Developed by Genotyping-by-sequencing and SSR Markers
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Title
Genetic Diversity, Population Structure, and Linkage Disequilibrium of a Core Collection of Ziziphus jujuba Assessed with Genome-wide SNPs Developed by Genotyping-by-sequencing and SSR Markers
Authors
Keywords
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Journal
Frontiers in Plant Science
Volume 8, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2017-04-18
DOI
10.3389/fpls.2017.00575
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Note: Only part of the references are listed.- Genetic diversity, linkage disequilibrium, population structure and construction of a core collection of Prunus avium L. landraces and bred cultivars
- (2016) José Antonio Campoy et al. BMC PLANT BIOLOGY
- Construction of a high-density genetic map of Ziziphus jujuba Mill. using genotyping by sequencing technology
- (2016) Zhong Zhang et al. Tree Genetics & Genomes
- High-throughput and Cost-effective Chicken Genotyping Using Next-Generation Sequencing
- (2016) Fábio Pértille et al. Scientific Reports
- Identifying the genetic diversity, genetic structure and a core collection of Ziziphus jujuba Mill. var. jujuba accessions using microsatellite markers
- (2016) Chaoqun Xu et al. Scientific Reports
- Population structure and genetic diversity characterization of a sunflower association mapping population using SSR and SNP markers
- (2015) Carla V Filippi et al. BMC PLANT BIOLOGY
- Exploring origins, invasion history and genetic diversity ofImperata cylindrica(L.) P. Beauv. (Cogongrass) in the United States using genotyping by sequencing
- (2015) A. Millie Burrell et al. MOLECULAR ECOLOGY
- An Operational SNP Panel Integrated to SSR Marker for the Assessment of Genetic Diversity and Population Structure of the Common Bean
- (2015) Bárbara S. F. Müller et al. PLANT MOLECULAR BIOLOGY REPORTER
- Genome-Wide Characterization of Simple Sequence Repeat (SSR) Loci in Chinese Jujube and Jujube SSR Primer Transferability
- (2015) Jing Xiao et al. PLoS One
- Exploring and Mobilizing the Gene Bank Biodiversity for Wheat Improvement
- (2015) Deepmala Sehgal et al. PLoS One
- Genotyping-by-sequencing (GBS) identified SNP tightly linked to QTL for pre-harvest sprouting resistance
- (2015) Meng Lin et al. THEORETICAL AND APPLIED GENETICS
- Employing genome-wide SNP discovery and genotyping strategy to extrapolate the natural allelic diversity and domestication patterns in chickpea
- (2015) Alice Kujur et al. Frontiers in Plant Science
- Classification and Characterization of Species within the Genus Lens Using Genotyping-by-Sequencing (GBS)
- (2015) Melissa M. L. Wong et al. PLoS One
- Validation of Genotyping-By-Sequencing Analysis in Populations of Tetraploid Alfalfa by 454 Sequencing
- (2015) Solen Rocher et al. PLoS One
- Scanning and Filling: Ultra-Dense SNP Genotyping Combining Genotyping-By-Sequencing, SNP Array and Whole-Genome Resequencing Data
- (2015) Davoud Torkamaneh et al. PLoS One
- An evaluation of genotyping by sequencing (GBS) to map the Breviaristatum-e (ari-e) locus in cultivated barley
- (2014) Hui Liu et al. BMC GENOMICS
- Genotyping-in-Thousands by sequencing (GT-seq): A cost effective SNP genotyping method based on custom amplicon sequencing
- (2014) Nathan R. Campbell et al. Molecular Ecology Resources
- Optimization of the genotyping-by-sequencing strategy for population genomic analysis in conifers
- (2014) Jin Pan et al. Molecular Ecology Resources
- Isolation and Characterization of Microsatellite Markers and Analysis of Genetic Diversity in Chinese Jujube (Ziziphus jujuba Mill.)
- (2014) Siqi Wang et al. PLoS One
- Rapid SNP Discovery and a RAD-Based High-Density Linkage Map in Jujube (Ziziphus Mill.)
- (2014) Jin Zhao et al. PLoS One
- The complex jujube genome provides insights into fruit tree biology
- (2014) Meng-Jun Liu et al. Nature Communications
- Fast and Cost-Effective Genetic Mapping in Apple Using Next-Generation Sequencing
- (2014) K. M. Gardner et al. G3-Genes Genomes Genetics
- Genetic diversity and population structure assessed by SSR and SNP markers in a large germplasm collection of grape
- (2013) Francesco Emanuelli et al. BMC PLANT BIOLOGY
- The Jujube (Ziziphus Jujuba Mill.) Fruit: A Review of Current Knowledge of Fruit Composition and Health Benefits
- (2013) Qing-Han Gao et al. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
- MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
- (2013) Koichiro Tamura et al. MOLECULAR BIOLOGY AND EVOLUTION
- A draft genome sequence of the pulse crop chickpea (Cicer arietinum L.)
- (2013) Mukesh Jain et al. PLANT JOURNAL
- An Improved Genotyping by Sequencing (GBS) Approach Offering Increased Versatility and Efficiency of SNP Discovery and Genotyping
- (2013) Humira Sonah et al. PLoS One
- A Next-Generation Sequencing Method for Genotyping-by-Sequencing of Highly Heterozygous Autotetraploid Potato
- (2013) Jan G. A. M. L. Uitdewilligen et al. PLoS One
- Comparison of SSR and SNP Markers in Estimation of Genetic Diversity and Population Structure of Indian Rice Varieties
- (2013) Nivedita Singh et al. PLoS One
- Population structure, genetic diversity and linkage disequilibrium in elite winter wheat assessed with SNP and SSR markers
- (2013) Tobias Würschum et al. THEORETICAL AND APPLIED GENETICS
- Switchgrass Genomic Diversity, Ploidy, and Evolution: Novel Insights from a Network-Based SNP Discovery Protocol
- (2013) Fei Lu et al. PLoS Genetics
- SNPs in stress-responsive rice genes: validation, genotyping, functional relevance and population structure
- (2012) Swarup K Parida et al. BMC GENOMICS
- Genetic Diversity and Population Structure in a European Collection of Rice
- (2012) Brigitte Courtois et al. CROP SCIENCE
- High Resolution Genetic Mapping by Genome Sequencing Reveals Genome Duplication and Tetraploid Genetic Structure of the Diploid Miscanthus sinensis
- (2012) Xue-Feng Ma et al. PLoS One
- Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach
- (2012) Jesse A. Poland et al. PLoS One
- Genomic Selection for Fruit Quality Traits in Apple (Malus×domestica Borkh.)
- (2012) Satish Kumar et al. PLoS One
- Comparative Analysis of Kabuli Chickpea Transcriptome with Desi and Wild Chickpea Provides a Rich Resource for Development of Functional Markers
- (2012) Gaurav Agarwal et al. PLoS One
- Population genomic and genome-wide association studies of agroclimatic traits in sorghum
- (2012) G. P. Morris et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Linkage disequilibrium in French wild cherry germplasm and worldwide sweet cherry germplasm
- (2012) Uraiwan Arunyawat et al. Tree Genetics & Genomes
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- Comparison of SSRs and SNPs in assessment of genetic relatedness in maize
- (2011) Xiaohong Yang et al. GENETICA
- Current trends in microsatellite genotyping
- (2011) E. GUICHOUX et al. Molecular Ecology Resources
- Genome-wide genetic marker discovery and genotyping using next-generation sequencing
- (2011) John W. Davey et al. NATURE REVIEWS GENETICS
- A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
- (2011) Robert J. Elshire et al. PLoS One
- Development and characterization of SSR markers in Chinese jujube (Ziziphus jujuba Mill.) and its related species
- (2011) Q.H. Ma et al. SCIENTIA HORTICULTURAE
- STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method
- (2011) Dent A. Earl et al. Conservation Genetics Resources
- Analysis of genetic diversity and population structure of rice cultivars from Korea, China and Japan using SSR markers
- (2010) Weiguo Zhao et al. Genes & Genomics
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection
- (2010) Hon-Ming Lam et al. NATURE GENETICS
- Genetic diversity in domesticated soybean (Glycine max) and its wild progenitor (Glycine soja) for simple sequence repeat and single-nucleotide polymorphism loci
- (2010) Ying-Hui Li et al. NEW PHYTOLOGIST
- Genetic diversity and population structure of a diverse set of rice germplasm for association mapping
- (2010) Liang Jin et al. THEORETICAL AND APPLIED GENETICS
- Population structure and genetic diversity in a commercial maize breeding program assessed with SSR and SNP markers
- (2010) Delphine Van Inghelandt et al. THEORETICAL AND APPLIED GENETICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Simulation Appraisal of the Adequacy of Number of Background Markers for Relationship Estimation in Association Mapping
- (2009) Jianming Yu et al. Plant Genome
- Natural selection has driven population differentiation in modern humans
- (2008) Luis B Barreiro et al. NATURE GENETICS
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