Comparative Genomics and Phylogenomics of East Asian Tulips (Amana, Liliaceae)

The Complete Chloroplast Genomes of Three Cardiocrinum (Liliaceae) Species: Comparative Genomic and Phylogenetic Analyses

(2017) Rui-Sen Lu et al.   Frontiers in Plant Science

The Complete Chloroplast Genome Sequences of Five Epimedium Species: Lights into Phylogenetic and Taxonomic Analyses

(2016) Yanjun Zhang et al.   Frontiers in Plant Science

A Phylogenetic Analysis of 34 Chloroplast Genomes Elucidates the Relationships between Wild and Domestic Species within the GenusCitrus

(2015) Jose Carbonell-Caballero et al.   MOLECULAR BIOLOGY AND EVOLUTION

Does complete plastid genome sequencing improve species discrimination and phylogenetic resolution in Araucaria ?

(2015) Markus Ruhsam et al.   Molecular Ecology Resources

Chloroplast DNA sequence utility for the lowest phylogenetic and phylogeographic inferences in angiosperms: The tortoise and the hare IV

(2014) Joey Shaw et al.   AMERICAN JOURNAL OF BOTANY

Species identification of the medicinal plant Tulipa edulis (Liliaceae) by DNA barcode marker

(2014) Hong-liang Ma et al.   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

High-accuracyde novoassembly and SNP detection of chloroplast genomes using a SMRT circular consensus sequencing strategy

(2014) Qiushi Li et al.   NEW PHYTOLOGIST

Chloroplast Phylogenomic Analyses Resolve Deep-Level Relationships of an Intractable Bamboo Tribe Arundinarieae (Poaceae)

(2014) Peng-Fei Ma et al.   SYSTEMATIC BIOLOGY

Amana wanzhensis (Liliaceae), a new species from Anhui, China

(2014) Bangxing Han et al.   Phytotaxa

Complete chloroplast genome of the genus Cymbidium: lights into the species identification, phylogenetic implications and population genetic analyses

(2013) Jun-Bo Yang et al.   BMC EVOLUTIONARY BIOLOGY

Familial relationships of the monocot order Liliales based on a molecular phylogenetic analysis using four plastid loci:matK,rbcL,atpBandatpF-H

(2013) Jung Sung Kim et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Tiptoe through the tulips - cultural history, molecular phylogenetics and classification ofTulipa(Liliaceae)

(2013) Maarten J. M. Christenhusz et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Comparative Genome Analysis and Phylogenetic Relationship of Order Liliales Insight from the Complete Plastid Genome Sequences of Two Lilies (Lilium longiflorum and Alstroemeria aurea)

(2013) Jung Sung Kim et al.   PLoS One

Complete Sequencing of Five Araliaceae Chloroplast Genomes and the Phylogenetic Implications

(2013) Rong Li et al.   PLoS One

Plastome sequences of two New World bamboos-Arundinaria gigantea and Cryptochloa strictiflora (Poaceae)-extend phylogenomic understanding of Bambusoideae

(2012) Sean V. Burke et al.   AMERICAN JOURNAL OF BOTANY

Phylogenetic systematics ofErythronium(Liliaceae): morphological and molecular analyses

(2012) John C. B. Clennett et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Phylogeny of the Liliales (Monocotyledons) with special emphasis on data partition congruence and RNA editing

(2012) Gitte Petersen et al.   CLADISTICS

Plastid genomes and deep relationships among the commelinid monocot angiosperms

(2012) Craig F. Barrett et al.   CLADISTICS

The Complete Chloroplast Genome of 17 Individuals of Pest Species Jacobaea vulgaris: SNPs, Microsatellites and Barcoding Markers for Population and Phylogenetic Studies

(2011) L. Doorduin et al.   DNA RESEARCH

Plant molecular phylogeography in China and adjacent regions: Tracing the genetic imprints of Quaternary climate and environmental change in the world’s most diverse temperate flora

(2011) Ying-Xiong Qiu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Responses to historical climate change identify contemporary threats to diversity in Dodecatheon

(2011) B. Oberle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots

(2010) M. J. Moore et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular systematics of Gagea and Lloydia (Liliaceae; Liliales): implications of analyses of nuclear ribosomal and plastid DNA sequences for infrageneric classification

(2009) M. Zarrei et al.   ANNALS OF BOTANY

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes

(2009) Matthew Parks et al.   BMC BIOLOGY

Molecular phylogeography of East Asian Kirengeshoma (Hydrangeaceae) in relation to Quaternary climate change and landbridge configurations

(2009) Ying-Xiong Qiu et al.   NEW PHYTOLOGIST

The systematic value of nuclear genome size for “all” species of Tulipa L. (Liliaceae)

(2009) Ben J. M. Zonneveld   PLANT SYSTEMATICS AND EVOLUTION

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION