Transcriptome and Metabolome Analyses Provide Insights into the Occurrence of Peel Roughing Disorder on Satsuma Mandarin (Citrus unshiu Marc.) Fruit

Comparative transcriptome analysis reveals a global insight into molecular processes regulating citrate accumulation in sweet orange (Citrus sinensis )

(2016) Xiaopeng Lu et al.   PHYSIOLOGIA PLANTARUM

Overexpression of a citrus basic helix-loop-helix transcription factor ( CubHLH1 ), which is homologous to Arabidopsis activation-tagged bri1 suppressor 1 interacting factor genes, modulates carotenoid metabolism in transgenic tomato

(2016) Tomoko Endo et al.   PLANT SCIENCE

Transcriptome analysis of blood orange (Citrus sinensis) following fruit bagging treatment by digital gene expression profiling

(2016) Qi Sun et al.   JOURNAL OF HORTICULTURAL SCIENCE & BIOTECHNOLOGY

Differential expression profiles and pathways of genes in sugarcane leaf at elongation stage in response to drought stress

(2016) Changning Li et al.   Scientific Reports

Expression Profiling of Several Gene Families Involved in Anthocyanin Biosynthesis in Apple (Malus domestica Borkh.) Skin During Fruit Development

(2015) Rui Meng et al.   JOURNAL OF PLANT GROWTH REGULATION

HMMER web server: 2015 update

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Stress responses in citrus peel: Comparative analysis of host responses to Huanglongbing disease and puffing disorder

(2015) Federico Martinelli et al.   SCIENTIA HORTICULTURAE

Soil chemical properties,'Guanximiyou' pummelo leaf mineral nutrient status and fruit quality in the southern region of Fujian province, China

(2015) Y Li et al.   Journal of Soil Science and Plant Nutrition

Fruit load induces changes in global gene expression and in abscisic acid (ABA) and indole acetic acid (IAA) homeostasis in citrus buds

(2014) Liron Shalom et al.   JOURNAL OF EXPERIMENTAL BOTANY

The role of MrbHLH1 and MrMYB1 in regulating anthocyanin biosynthetic genes in tobacco and Chinese bayberry (Myrica rubra) during anthocyanin biosynthesis

(2013) Xiao-Fen Liu et al.   PLANT CELL TISSUE AND ORGAN CULTURE

The apple WD40 protein MdTTG1 interacts with bHLH but not MYB proteins to regulate anthocyanin accumulation

(2012) Xiu-Hong An et al.   JOURNAL OF PLANT PHYSIOLOGY

The draft genome of sweet orange (Citrus sinensis)

(2012) Qiang Xu et al.   NATURE GENETICS

The bHLH transcription factor MdbHLH3 promotes anthocyanin accumulation and fruit colouration in response to low temperature in apples

(2012) XING-BIN XIE et al.   PLANT CELL AND ENVIRONMENT

Effects of gibberellin treatment during flowering induction period on global gene expression and the transcription of flowering-control genes in Citrus buds

(2012) Ravit Goldberg-Moeller et al.   PLANT SCIENCE

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Selection of reference genes for quantitative real-time RT-PCR analysis in citrus

(2011) Jiawen Yan et al.   MOLECULAR BIOLOGY REPORTS

SPATULA and ALCATRAZ, are partially redundant, functionally diverging bHLH genes required for Arabidopsis gynoecium and fruit development

(2011) Michael Groszmann et al.   PLANT JOURNAL

PlnTFDB: updated content and new features of the plant transcription factor database

(2009) Paulino Pérez-Rodríguez et al.   NUCLEIC ACIDS RESEARCH

Delay of early fruitlet abscission by branch girdling in citrus coincides with previous increases in carbohydrate and gibberellin concentrations

(2009) Jalel Mahouachi et al.   PLANT GROWTH REGULATION

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Functional domains of SPATULA, a bHLH transcription factor involved in carpel and fruit development in Arabidopsis

(2008) Michael Groszmann et al.   PLANT JOURNAL

Profiling gibberellin (GA3)-responsive genes in mature mandarin fruit using a citrus 22K oligoarray

(2008) Hiroshi Fujii et al.   SCIENTIA HORTICULTURAE