Epidemiology of Danish Aeromonas salmonicida subsp. salmonicida in Fish Farms Using Whole Genome Sequencing

Increasing genomic diversity and evidence of constrained lifestyle evolution due to insertion sequences in Aeromonas salmonicida

(2016) Antony T. Vincent et al.   BMC GENOMICS

Antibiotic resistance due to an unusual ColE1-type replicon plasmid in Aeromonas salmonicida

(2016) Antony T. Vincent et al.   MICROBIOLOGY-SGM

Variants of a genomic island in Aeromonas salmonicida subsp. salmonicida link isolates with their geographical origins

(2015) Jean-Guillaume Emond-Rheault et al.   VETERINARY MICROBIOLOGY

Diversity and Homogeneity among Small Plasmids of Aeromonas salmonicida subsp. salmonicida Linked with Geographical Origin

(2015) Sabrina A. Attéré et al.   Frontiers in Microbiology

Detection of Variants of the pRAS3, pAB5S9, and pSN254 Plasmids in Aeromonas salmonicida subsp. salmonicida: Multidrug Resistance, Interspecies Exchanges, and Plasmid Reshaping

(2014) Antony T. Vincent et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Cloning and Characterisation of Multiple Ferritin Isoforms in the Atlantic Salmon (Salmo salar)

(2014) Jun-Hoe Lee et al.   PLoS One

Solving the Problem of Comparing Whole Bacterial Genomes across Different Sequencing Platforms

(2014) Rolf S. Kaas et al.   PLoS One

Virulence, genomic features, and plasticity of Aeromonas salmonicida subsp. salmonicida, the causative agent of fish furunculosis

(2013) Stéphanie Dallaire-Dufresne et al.   VETERINARY MICROBIOLOGY

snpTree - a web-server to identify and construct SNP trees from whole genome sequence data

(2012) Pimlapas Leekitcharoenphon et al.   BMC GENOMICS

Identification of acquired antimicrobial resistance genes

(2012) E. Zankari et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

An Insertion Sequence-Dependent Plasmid Rearrangement in Aeromonas salmonicida Causes the Loss of the Type Three Secretion System

(2012) Katherine H. Tanaka et al.   PLoS One

Molecular Basis of Sulfonamide and Trimethoprim Resistance in Fish-Pathogenic Aeromonas Isolates

(2011) Kristina Kadlec et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Alteration of virulence factors and rearrangement of pAsa5 plasmid caused by the growth of Aeromonas salmonicida in stressful conditions

(2011) Rana K. Daher et al.   VETERINARY MICROBIOLOGY

TADB: a web-based resource for Type 2 toxin–antitoxin loci in bacteria and archaea

(2010) Yucheng Shao et al.   NUCLEIC ACIDS RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Iron in innate immunity: starve the invaders

(2009) Tomas Ganz   CURRENT OPINION IN IMMUNOLOGY

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genetic characterization of pAsa6, a new plasmid from Aeromonas salmonicida subsp. salmonicida that encodes a type III effector protein AopH homolog

(2009) Mohsen Najimi et al.   PLASMID

The genome of Aeromonas salmonicida subsp. salmonicida A449: insights into the evolution of a fish pathogen

(2008) Michael E Reith et al.   BMC GENOMICS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Polymerase Chain Reaction Amplification of Repetitive Intergenic Consensus and Repetitive Extragenic Palindromic Sequences for Molecular Typing ofPseudomonas anguillisepticaandAeromonas salmonicida

(2008) Roxana Beaz-Hidalgo et al.   JOURNAL OF AQUATIC ANIMAL HEALTH

Surveillance of health status on eight marine rainbow trout,Oncorhynchus mykiss(Walbaum), farms in Denmark in 2006

(2008) K Pedersen et al.   JOURNAL OF FISH DISEASES