Exploring Microdiversity in Novel Kordia sp. (Bacteroidetes) with Proteorhodopsin from the Tropical Indian Ocean via Single Amplified Genomes

A snapshot on spatial and vertical distribution of bacterial communities in the eastern Indian Ocean

(2016) Jing Wang et al.   ACTA OCEANOLOGICA SINICA

Kordia ulvae sp. nov., a bacterium isolated from the surface of green marine algae Ulva sp.

(2016) Feng Qi et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Marine Bacterial and Archaeal Ion-Pumping Rhodopsins: Genetic Diversity, Physiology, and Ecology

(2016) Jarone Pinhassi et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Aurantivirga profunda gen. nov., sp. nov., isolated from deep-seawater, a novel member of the family Flavobacteriaceae

(2015) Jaeho Song et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Kordia zhangzhouensis sp. nov., isolated from surface freshwater

(2015) Juan Du et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Winter diversity and expression of proteorhodopsin genes in a polar ocean

(2015) Dan Nguyen et al.   ISME Journal

Draft genome sequence of Parvularcula oceani JLT2013T, a rhodopsin-containing bacterium isolated from deep-sea water of the Southeastern Pacific

(2015) Kai Tang et al.   Marine Genomics

Particle-association lifestyle is a phylogenetically conserved trait in bathypelagic prokaryotes

(2015) Guillem Salazar et al.   MOLECULAR ECOLOGY

Structure and function of the global ocean microbiome

(2015) S. Sunagawa et al.   SCIENCE

Multilocus Sequence Analysis of the Marine Bacterial Genus Tenacibaculum Suggests Parallel Evolution of Fish Pathogenicity and Endemic Colonization of Aquaculture Systems

(2014) Christophe Habib et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Validation of a new catalysed reporter deposition-fluorescencein situhybridization probe for the accurate quantification of marineBacteroidetespopulations

(2014) Silvia G. Acinas et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial Diversity in Deep-Sea Sediments from Afanasy Nikitin Seamount, Equatorial Indian Ocean

(2014) Rakhee Khandeparker et al.   GEOMICROBIOLOGY JOURNAL

Master recyclers: features and functions of bacteria associated with phytoplankton blooms

(2014) Alison Buchan et al.   NATURE REVIEWS MICROBIOLOGY

Explaining microbial genomic diversity in light of evolutionary ecology

(2014) Otto X. Cordero et al.   NATURE REVIEWS MICROBIOLOGY

Single-Cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild Prochlorococcus

(2014) N. Kashtan et al.   SCIENCE

Global-scale distributions of marine surface bacterioplankton groups along gradients of salinity, temperature, and chlorophyll: a meta-analysis of fluorescence in situ hybridization studies

(2013) T Lefort et al.   AQUATIC MICROBIAL ECOLOGY

Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities

(2013) Ramiro Logares et al.   ENVIRONMENTAL MICROBIOLOGY

Kordia aquimaris sp. nov., a zeaxanthin-producing member of the family Flavobacteriaceae isolated from surface seawater, and emended description of the genus Kordia

(2013) A. Hameed et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Kordia antarctica sp. nov., isolated from Antarctic seawater

(2013) K. Baek et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Kordia jejudonensis sp. nov., isolated from the junction between the ocean and a freshwater spring, and emended description of the genus Kordia

(2013) S. Park et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Ecology of marine Bacteroidetes: a comparative genomics approach

(2013) Beatriz Fernández-Gómez et al.   ISME Journal

Metagenomic species profiling using universal phylogenetic marker genes

(2013) Shinichi Sunagawa et al.   NATURE METHODS

Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean

(2013) B. K. Swan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Spatial and temporal variability among marine Bacteroidetes populations in the NW Mediterranean Sea

(2013) Cristina Díez-Vives et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

A Genomic Survey of Reb Homologs Suggests Widespread Occurrence of R-Bodies in Proteobacteria

(2013) Kasie Raymann et al.   G3-Genes Genomes Genetics

Taxonomic composition of the particle-attached and free-living bacterial assemblages in the Northwest Mediterranean Sea analyzed by pyrosequencing of the 16S rRNA

(2013) Bibiana G. Crespo et al.   MicrobiologyOpen

Patterns and architecture of genomic islands in marine bacteria

(2012) Beatriz Fernández-Gómez et al.   BMC GENOMICS

Diversity and functional analysis of proteorhodopsin in marine Flavobacteria

(2012) Susumu Yoshizawa et al.   ENVIRONMENTAL MICROBIOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Summer Diatom Blooms in the North Pacific Subtropical Gyre: 2008–2009

(2012) Tracy A. Villareal et al.   PLoS One

Composition of bacterial communities in deep-sea sediments from the South China Sea, the Andaman Sea and the Indian Ocean

(2011) Houbo Wu   African Journal of Microbiology Research

The Rare Bacterial Biosphere

(2011) Carlos Pedrós-Alió   Annual Review of Marine Science

Comparison of Growth Rates of Aerobic Anoxygenic Phototrophic Bacteria and Other Bacterioplankton Groups in Coastal Mediterranean Waters

(2011) Isabel Ferrera et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial species may exist, metagenomics reveal

(2011) Alejandro Caro-Quintero et al.   ENVIRONMENTAL MICROBIOLOGY

Genomic content of uncultured Bacteroidetes from contrasting oceanic provinces in the North Atlantic Ocean

(2011) Paola R. Gómez-Pereira et al.   ENVIRONMENTAL MICROBIOLOGY

High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton

(2011) Manuel Martinez-Garcia et al.   ISME Journal

Diel changes in bulk and single-cell bacterial heterotrophic activity in winter surface waters of the northwestern Mediterranean Sea

(2011) Clara Ruiz-González et al.   LIMNOLOGY AND OCEANOGRAPHY

Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean

(2011) B. K. Swan et al.   SCIENCE

Local Mobile Gene Pools Rapidly Cross Species Boundaries To Create Endemicity within Global Vibrio cholerae Populations

(2011) Y. Boucher et al.   mBio

Kordia periserrulae sp. nov., isolated from a marine polychaete Periserrula leucophryna, and emended description of the genus Kordia

(2010) A. Choi et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Latitudinal distribution of prokaryotic picoplankton populations in the Atlantic Ocean

(2009) Martha Schattenhofer et al.   ENVIRONMENTAL MICROBIOLOGY

Assembling the Marine Metagenome, One Cell at a Time

(2009) Tanja Woyke et al.   PLoS One

Biogeography of the ubiquitous marine bacteriumAlteromonas macleodiidetermined by multilocus sequence analysis

(2008) ELENA IVARS-MARTÍNEZ et al.   MOLECULAR ECOLOGY

Proteorhodopsins: an array of physiological roles?

(2008) Jed A. Fuhrman et al.   NATURE REVIEWS MICROBIOLOGY

Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp. MED152 (Flavobacteria)

(2008) J. M. Gonzalez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA