Simultaneous measurement of chromatin accessibility, DNA methylation, and nucleosome phasing in single cells
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Title
Simultaneous measurement of chromatin accessibility, DNA methylation, and nucleosome phasing in single cells
Authors
Keywords
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Journal
eLife
Volume 6, Issue -, Pages -
Publisher
eLife Sciences Organisation, Ltd.
Online
2017-06-27
DOI
10.7554/elife.23203
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- (2016) Christof Angermueller et al. NATURE METHODS
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- (2015) Evan Z. Macosko et al. CELL
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- (2015) Dirk Schübeler NATURE
- Single-cell ChIP-seq reveals cell subpopulations defined by chromatin state
- (2015) Assaf Rotem et al. NATURE BIOTECHNOLOGY
- Multiplex single-cell profiling of chromatin accessibility by combinatorial cellular indexing
- (2015) D. A. Cusanovich et al. SCIENCE
- Single-Cell DNA Methylome Sequencing and Bioinformatic Inference of Epigenomic Cell-State Dynamics
- (2015) Matthias Farlik et al. Cell Reports
- Taking Stock of Regulatory Variation
- (2015) Matthew T. Maurano et al. Cell Systems
- genomation: a toolkit to summarize, annotate and visualize genomic intervals
- (2014) A. Akalin et al. BIOINFORMATICS
- Reconfiguration of nucleosome-depleted regions at distal regulatory elements accompanies DNA methylation of enhancers and insulators in cancer
- (2014) Phillippa C. Taberlay et al. GENOME RESEARCH
- Dissecting neural differentiation regulatory networks through epigenetic footprinting
- (2014) Michael J. Ziller et al. NATURE
- Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq
- (2014) Barbara Treutlein et al. NATURE
- Single-cell RNA-seq reveals dynamic paracrine control of cellular variation
- (2014) Alex K. Shalek et al. NATURE
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- (2014) Sébastien A Smallwood et al. NATURE METHODS
- Single-cell nucleosome mapping reveals the molecular basis of gene expression heterogeneity
- (2014) E. C. Small et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Massively Parallel Single-Cell RNA-Seq for Marker-Free Decomposition of Tissues into Cell Types
- (2014) D. A. Jaitin et al. SCIENCE
- The UCSC Genome Browser database: 2014 update
- (2013) Donna Karolchik et al. NUCLEIC ACIDS RESEARCH
- Genome-wide mapping of nucleosome positioning and DNA methylation within individual DNA molecules
- (2012) T. K. Kelly et al. GENOME RESEARCH
- DANPOS: Dynamic analysis of nucleosome position and occupancy by sequencing
- (2012) K. Chen et al. GENOME RESEARCH
- An expansive human regulatory lexicon encoded in transcription factor footprints
- (2012) Shane Neph et al. NATURE
- DNA methylome analysis using short bisulfite sequencing data
- (2012) Felix Krueger et al. NATURE METHODS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Determinants of nucleosome organization in primary human cells
- (2011) Anton Valouev et al. NATURE
- DNA-binding factors shape the mouse methylome at distal regulatory regions
- (2011) Michael B. Stadler et al. NATURE
- Mapping and analysis of chromatin state dynamics in nine human cell types
- (2011) Jason Ernst et al. NATURE
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Dynamic Regulation of Nucleosome Positioning in the Human Genome
- (2008) Dustin E. Schones et al. CELL
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