Novel Approach to Classify Plants Based on Metabolite-Content Similarity

dendextend: an R package for visualizing, adjusting and comparing trees of hierarchical clustering

(2015) Tal Galili   BIOINFORMATICS

Phylogeny of metabolic networks: A spectral graph theoretical approach

(2015) Krishanu Deyasi et al.   JOURNAL OF BIOSCIENCES

Development and Mining of a Volatile Organic Compound Database

(2015) Azian Azamimi Abdullah et al.   Biomed Research International

The Calculation of Molecular Structural Similarity: Principles and Practice

(2014) Peter Willett   Molecular Informatics

Systems Biology in the Context of Big Data and Networks

(2014) Md. Altaf-Ul-Amin et al.   Biomed Research International

Reconstruction of phyletic trees by global alignment of multiple metabolic networks

(2013) Cheng-Yu Ma et al.   BMC BIOINFORMATICS

Horizontal gene transfer in plants

(2013) Caihua Gao et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

The big challenges of big data

(2013) Vivien Marx   NATURE

Systematization of the Protein Sequence Diversity in Enzymes Related to Secondary Metabolic Pathways in Plants, in the Context of Big Data Biology Inspired by the KNApSAcK Motorcycle Database

(2013) Shun Ikeda et al.   PLANT AND CELL PHYSIOLOGY

KNApSAcK Metabolite Activity Database for Retrieving the Relationships Between Metabolites and Biological Activities

(2013) Y. Nakamura et al.   PLANT AND CELL PHYSIOLOGY

Can phylogeny predict chemical diversity and potential medicinal activity of plants? A case study of amaryllidaceae

(2012) Nina Rønsted et al.   BMC EVOLUTIONARY BIOLOGY

LIBSVM

(2012) Chih-Chung Chang et al.   ACM Transactions on Intelligent Systems and Technology

Reconstructing phylogeny from metabolic substrate-product relationships

(2011) Che-Wei Chang et al.   BMC BIOINFORMATICS

The NCBI Taxonomy database

(2011) S. Federhen   NUCLEIC ACIDS RESEARCH

KNApSAcK Family Databases: Integrated Metabolite–Plant Species Databases for Multifaceted Plant Research

(2011) Farit Mochamad Afendi et al.   PLANT AND CELL PHYSIOLOGY

The Use of Phylogeny to Interpret Cross-Cultural Patterns in Plant Use and Guide Medicinal Plant Discovery: An Example from Pterocarpus (Leguminosae)

(2011) C. Haris Saslis-Lagoudakis et al.   PLoS One

Comparative classification of species and the study of pathway evolution based on the alignment of metabolic pathways

(2010) Adi Mano et al.   BMC BIOINFORMATICS

PubChem: a public information system for analyzing bioactivities of small molecules

(2009) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

ChemmineR: a compound mining framework for R

(2008) Y. Cao et al.   BIOINFORMATICS

Horizontal gene transfer in eukaryotic evolution

(2008) Patrick J. Keeling et al.   NATURE REVIEWS GENETICS

Large-scale reconstruction and phylogenetic analysis of metabolic environments

(2008) E. Borenstein et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA