Are There Knots in Chromosomes?

Dynamics of DNA Knots during Chain Relaxation

(2017) Alexander R. Klotz et al.   MACROMOLECULES

3D structures of individual mammalian genomes studied by single-cell Hi-C

(2017) Tim J. Stevens et al.   NATURE

Direct observation of DNA knots using a solid-state nanopore

(2016) Calin Plesa et al.   Nature Nanotechnology

Population-based 3D genome structure analysis reveals driving forces in spatial genome organization

(2016) Harianto Tjong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Monte Carlo Study of Knots in Long Double-Stranded DNA Chains

(2016) Florian C. Rieger et al.   PLoS Computational Biology

Shaping mitotic chromosomes: From classical concepts to molecular mechanisms

(2015) Marc Kschonsak et al.   BIOESSAYS

The 4D nucleome: Evidence for a dynamic nuclear landscape based on co-aligned active and inactive nuclear compartments

(2015) Thomas Cremer et al.   FEBS LETTERS

A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping

(2014) Suhas S.P. Rao et al.   CELL

From a melt of rings to chromosome territories: the role of topological constraints in genome folding

(2014) Jonathan D Halverson et al.   REPORTS ON PROGRESS IN PHYSICS

Genome Architecture: Domain Organization of Interphase Chromosomes

(2013) Wendy A. Bickmore et al.   CELL

Architectural Protein Subclasses Shape 3D Organization of Genomes during Lineage Commitment

(2013) Jennifer E. Phillips-Cremins et al.   CELL

Supercoiling in DNA and chromatin

(2013) Nick Gilbert et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Topological friction strongly affects viral DNA ejection

(2013) D. Marenduzzo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells

(2013) J. Zuin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Organization of the Mitotic Chromosome

(2013) N. Naumova et al.   SCIENCE

Three-Dimensional Folding and Functional Organization Principles of the Drosophila Genome

(2012) Tom Sexton et al.   CELL

Topological domains in mammalian genomes identified by analysis of chromatin interactions

(2012) Jesse R. Dixon et al.   NATURE

Spatial partitioning of the regulatory landscape of the X-inactivation centre

(2012) Elphège P. Nora et al.   NATURE

Effective stiffening of DNA due to nematic ordering causes DNA molecules packed in phage capsids to preferentially form torus knots

(2012) D. Reith et al.   NUCLEIC ACIDS RESEARCH

The fractal globule as a model of chromatin architecture in the cell

(2011) Leonid A. Mirny   CHROMOSOME RESEARCH

Genome architectures revealed by tethered chromosome conformation capture and population-based modeling

(2011) Reza Kalhor et al.   NATURE BIOTECHNOLOGY

Knot formation in newly translated proteins is spontaneous and accelerated by chaperonins

(2011) Anna L Mallam et al.   Nature Chemical Biology

Compression and self-entanglement of single DNA molecules under uniform electric field

(2011) J. Tang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structures and folding pathways of topologically knotted proteins

(2010) Peter Virnau et al.   JOURNAL OF PHYSICS-CONDENSED MATTER

Knotted vs. Unknotted Proteins: Evidence of Knot-Promoting Loops

(2010) Raffaello Potestio et al.   PLoS Computational Biology

A Stevedore's Protein Knot

(2010) Daniel Bölinger et al.   PLoS Computational Biology

Dodging the crisis of folding proteins with knots

(2009) J. I. Sulkowska et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

(2009) E. Lieberman-Aiden et al.   SCIENCE

Simulations of Knotting in Confined Circular DNA

(2008) C. Micheletti et al.   BIOPHYSICAL JOURNAL

Structure and Dynamics of Interphase Chromosomes

(2008) Angelo Rosa et al.   PLoS Computational Biology