The yeast form of the fungus Candida albicans promotes persistence in the gut of gnotobiotic mice

Sfp1 and Rtg3 reciprocally modulate carbon source-conditional stress adaptation in the pathogenic yeast Candida albicans

(2017) Stavroula L. Kastora et al.   MOLECULAR MICROBIOLOGY

Host-Protozoan Interactions Protect from Mucosal Infections through Activation of the Inflammasome

(2016) Aleksey Chudnovskiy et al.   CELL

The Fungal Mycobiota: Small Numbers, Large Impacts

(2016) Carol A. Kumamoto   Cell Host & Microbe

Immunological Consequences of Intestinal Fungal Dysbiosis

(2016) Matthew L. Wheeler et al.   Cell Host & Microbe

ACandida albicansregulator of disseminated infection operates primarily as a repressor and governs cell surface remodeling

(2016) Lena Böhm et al.   MOLECULAR MICROBIOLOGY

Candida albicans cell-type switching and functional plasticity in the mammalian host

(2016) Suzanne M. Noble et al.   NATURE REVIEWS MICROBIOLOGY

TheCandidaGenome Database (CGD): incorporation of Assembly 22, systematic identifiers and visualization of high throughput sequencing data

(2016) Marek S. Skrzypek et al.   NUCLEIC ACIDS RESEARCH

Transcriptional rewiring over evolutionary timescales changes quantitative and qualitative properties of gene expression

(2016) Chiraj K Dalal et al.   eLife

Quantitative Imaging of Gut Microbiota Spatial Organization

(2015) Kristen A. Earle et al.   Cell Host & Microbe

Normalization of Host Intestinal Mucus Layers Requires Long-Term Microbial Colonization

(2015) Malin E.V. Johansson et al.   Cell Host & Microbe

Streptococcus gallolyticusPil3 Pilus Is Required for Adhesion to Colonic Mucus and for Colonization of Mouse Distal Colon

(2015) Mariana Martins et al.   JOURNAL OF INFECTIOUS DISEASES

Activation of HIF-1α and LL-37 by commensal bacteria inhibits Candida albicans colonization

(2015) Di Fan et al.   NATURE MEDICINE

Are Human Intestinal Eukaryotes Beneficial or Commensals?

(2015) Julius Lukeš et al.   PLoS Pathogens

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Rat Indwelling Urinary Catheter Model of Candida albicans Biofilm Infection

(2014) Jeniel E. Nett et al.   INFECTION AND IMMUNITY

Phenotypic Screening of a Targeted Mutant Library Reveals Campylobacter jejuni Defenses against Oxidative Stress

(2014) A. Flint et al.   INFECTION AND IMMUNITY

Mucins Suppress Virulence Traits of Candida albicans

(2014) Nicole L. Kavanaugh et al.   mBio

Fungal Biofilms, Drug Resistance, and Recurrent Infection

(2014) J. V. Desai et al.   Cold Spring Harbor Perspectives in Medicine

Comparative Genome Analysis and Gene Finding in Candida Species Using CGOB

(2013) Sarah L. Maguire et al.   MOLECULAR BIOLOGY AND EVOLUTION

Topographic diversity of fungal and bacterial communities in human skin

(2013) Keisha Findley et al.   NATURE

Passage through the mammalian gut triggers a phenotypic switch that promotes Candida albicans commensalism

(2013) Kalyan Pande et al.   NATURE GENETICS

Identification and characterization of a previously undescribed family of sequence-specific DNA-binding domains

(2013) M. B. Lohse et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Candida albicans Commensalism and Pathogenicity Are Intertwined Traits Directed by a Tightly Knit Transcriptional Regulatory Circuit

(2013) J. Christian Pérez et al.   PLOS BIOLOGY

Regulatory Circuits That Enable Proliferation of the Fungus Candida albicans in a Mammalian Host

(2013) J. Christian Pérez et al.   PLoS Pathogens

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

A Recently Evolved Transcriptional Network Controls Biofilm Development in Candida albicans

(2012) Clarissa J. Nobile et al.   CELL

Pho85, Pcl1, and Hms1 Signaling Governs Candida albicans Morphogenesis Induced by High Temperature or Hsp90 Compromise

(2012) Rebecca S. Shapiro et al.   CURRENT BIOLOGY

Normal Adaptation of Candida albicans to the Murine Gastrointestinal Tract Requires Efg1p-Dependent Regulation of Metabolic and Host Defense Genes

(2012) Jessica V. Pierce et al.   EUKARYOTIC CELL

Interactions Between Commensal Fungi and the C-Type Lectin Receptor Dectin-1 Influence Colitis

(2012) I. D. Iliev et al.   SCIENCE

Variation in Candida albicans EFG1 Expression Enables Host-Dependent Changes in Colonizing Fungal Populations

(2012) J. V. Pierce et al.   mBio

Portrait of Candida albicans Adherence Regulators

(2012) Jonathan S. Finkel et al.   PLoS Pathogens

An Iron Homeostasis Regulatory Circuit with Reciprocal Roles in Candida albicans Commensalism and Pathogenesis

(2011) Changbin Chen et al.   Cell Host & Microbe

Inflammation and gastrointestinal Candida colonization

(2011) Carol A Kumamoto   CURRENT OPINION IN MICROBIOLOGY

The Antibacterial Lectin RegIII  Promotes the Spatial Segregation of Microbiota and Host in the Intestine

(2011) S. Vaishnava et al.   SCIENCE

Candida albicans Ume6, a Filament-Specific Transcriptional Regulator, Directs Hyphal Growth via a Pathway Involving Hgc1 Cyclin-Related Protein

(2010) Patricia L. Carlisle et al.   EUKARYOTIC CELL

Adaptations of Candida albicans for Growth in the Mammalian Intestinal Tract

(2010) Ari Rosenbach et al.   EUKARYOTIC CELL

Systematic screens of a Candida albicans homozygous deletion library decouple morphogenetic switching and pathogenicity

(2010) Suzanne M Noble et al.   NATURE GENETICS

White–opaque switching in Candida albicans

(2009) Matthew B Lohse et al.   CURRENT OPINION IN MICROBIOLOGY

Comparative genomic analysis of Lactobacillus rhamnosus GG reveals pili containing a human- mucus binding protein

(2009) M. Kankainen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Phenotypic Profile of the Candida albicans Regulatory Network

(2009) Oliver R. Homann et al.   PLoS Genetics

Transcriptional Regulation of Carbohydrate Metabolism in the Human Pathogen Candida albicans

(2009) Christopher Askew et al.   PLoS Pathogens

fdrtool: a versatile R package for estimating local and tail area-based false discovery rates

(2008) K. Strimmer   BIOINFORMATICS

Candida albicanstranscription factor Rim101 mediates pathogenic interactions through cell wall functions

(2008) Clarissa J. Nobile et al.   CELLULAR MICROBIOLOGY

Animal models of mucosal Candida infection

(2008) Julian R. Naglik et al.   FEMS MICROBIOLOGY LETTERS

UME6, a Novel Filament-specific Regulator of Candida albicans Hyphal Extension and Virulence

(2008) Mohua Banerjee et al.   MOLECULAR BIOLOGY OF THE CELL

Mucosal Damage and Neutropenia Are Required for Candida albicans Dissemination

(2008) Andrew Y. Koh et al.   PLoS Pathogens

Expression levels of a filament-specific transcriptional regulator are sufficient to determine Candida albicans morphology and virulence

(2008) P. L. Carlisle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA