Genome-wide evolutionary dynamics of influenza B viruses on a global scale

Knowns and unknowns of influenza B viruses

(2016) Marios Koutsakos et al.   Future Microbiology

Circulating pattern and genomic characteristics of influenza B viruses in Taiwan from 2003 to 2014

(2016) Shu-Ming Kuo et al.   JOURNAL OF THE FORMOSAN MEDICAL ASSOCIATION

Reverse genetics vaccine seeds for influenza: Proof of concept in the source of PB1 as a determinant factor in virus growth and antigen yield

(2016) Marta Gíria et al.   VIROLOGY

ggtree: anrpackage for visualization and annotation of phylogenetic trees with their covariates and other associated data

(2016) Guangchuang Yu et al.   Methods in Ecology and Evolution

The global antigenic diversity of swine influenza A viruses

(2016) Nicola S Lewis et al.   eLife

Reassortment compatibility between PB1, PB2, and HA genes of the two influenza B virus lineages in mammalian cells

(2016) Jin Il Kim et al.   Scientific Reports

Evolution of Influenza B Virus in Kuala Lumpur, Malaysia, between 1995 and 2008

(2015) I-Ching Sam et al.   JOURNAL OF VIROLOGY

Global circulation patterns of seasonal influenza viruses vary with antigenic drift

(2015) Trevor Bedford et al.   NATURE

Epidemiological and Evolutionary Dynamics of Influenza B Viruses in Malaysia, 2012-2014

(2015) Xiang Yong Oong et al.   PLoS One

The contrasting phylodynamics of human influenza B viruses

(2015) Dhanasekaran Vijaykrishna et al.   eLife

Molecular Epidemiology and Phylogenetic Analyses of Influenza B Virus in Thailand during 2010 to 2014

(2015) Nipaporn Tewawong et al.   PLoS One

AliView: a fast and lightweight alignment viewer and editor for large datasets

(2014) Anders Larsson   BIOINFORMATICS

Influenza Virus PB1 and Neuraminidase Gene Segments Can Cosegregate during Vaccine Reassortment Driven by Interactions in the PB1 Coding Region

(2014) J. C. A. Cobbin et al.   JOURNAL OF VIROLOGY

Reassortment between Influenza B Lineages and the Emergence of a Coadapted PB1–PB2–HA Gene Complex

(2014) Gytis Dudas et al.   MOLECULAR BIOLOGY AND EVOLUTION

WHO recommendations for the viruses used in the 2013–2014 Northern Hemisphere influenza vaccine: Epidemiology, antigenic and genetic characteristics of influenza A(H1N1)pdm09, A(H3N2) and B influenza viruses collected from October 2012 to January 2013

(2014) Ian G. Barr et al.   VACCINE

Integrating influenza antigenic dynamics with molecular evolution

(2014) Trevor Bedford et al.   eLife

Differing Epidemiological Dynamics of Influenza B Virus Lineages in Guangzhou, Southern China, 2009-2010

(2013) Y. Tan et al.   JOURNAL OF VIROLOGY

The Source of the PB1 Gene in Influenza Vaccine Reassortants Selectively Alters the Hemagglutinin Content of the Resulting Seed Virus

(2013) J. C. A. Cobbin et al.   JOURNAL OF VIROLOGY

Viral population analysis and minority-variant detection using short read next-generation sequencing

(2013) S. J. Watson et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Surveillance and Vaccine Effectiveness of an Influenza Epidemic Predominated by Vaccine-Mismatched Influenza B/Yamagata-Lineage Viruses in Taiwan, 2011−12 Season

(2013) Yi-Chun Lo et al.   PLoS One

Substitutions Near the Receptor Binding Site Determine Major Antigenic Change During Influenza Virus Evolution

(2013) B. F. Koel et al.   SCIENCE

Structural basis for the divergent evolution of influenza B virus hemagglutinin

(2013) Fengyun Ni et al.   VIROLOGY

A counting renaissance: combining stochastic mapping and empirical Bayes to quickly detect amino acid sites under positive selection

(2012) Philippe Lemey et al.   BIOINFORMATICS

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Fatal Influenza B Infections: Time to Reexamine Influenza Research Priorities

(2012) J. A. McCullers et al.   JOURNAL OF INFECTIOUS DISEASES

A Cluster of Patients Infected With I221V Influenza B Virus Variants With Reduced Oseltamivir Susceptibility—North Carolina and South Carolina, 2010–2011

(2012) Shikha Garg et al.   JOURNAL OF INFECTIOUS DISEASES

Phylogenetic and Evolutionary History of Influenza B Viruses, which Caused a Large Epidemic in 2011–2012, Taiwan

(2012) Ji-Rong Yang et al.   PLoS One

Highly Conserved Protective Epitopes on Influenza B Viruses

(2012) C. Dreyfus et al.   SCIENCE

Public health impact of including two lineages of influenza B in a quadrivalent seasonal influenza vaccine

(2012) Carrie Reed et al.   VACCINE

Strength and tempo of selection revealed in viral gene genealogies

(2011) Trevor Bedford et al.   BMC EVOLUTIONARY BIOLOGY

Surveillance and molecular characterization of human influenza B viruses during 2006–2010 revealed co-circulation of Yamagata-like and Victoria-like strains in eastern India

(2011) Tapasi Roy et al.   INFECTION GENETICS AND EVOLUTION

The Genomic Rate of Molecular Adaptation of the Human Influenza A Virus

(2011) Samir Bhatt et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Passage in egg culture is a major cause of apparent positive selection in influenza B hemagglutinin

(2009) Derek Gatherer   JOURNAL OF MEDICAL VIROLOGY

Learning to Count: Robust Estimates for Labeled Distances between Molecular Sequences

(2009) J. D. O'Brien et al.   MOLECULAR BIOLOGY AND EVOLUTION

Identification of a PA-Binding Peptide with Inhibitory Activity against Influenza A and B Virus Replication

(2009) Kerstin Wunderlich et al.   PLoS One

Epidemiological, antigenic and genetic characteristics of seasonal influenza A(H1N1), A(H3N2) and B influenza viruses: Basis for the WHO recommendation on the composition of influenza vaccines for use in the 2009–2010 Northern Hemisphere season

(2009) Ian G. Barr et al.   VACCINE

Cocirculation of Antigenic Variants and the Vaccine-Type Virus during the 2004-2005 Influenza B Virus Epidemics in Japan

(2008) N. Nakagawa et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Universal Primer Set for Amplification and Sequencing of HA0 Cleavage Sites of All Influenza A Viruses

(2008) A. Gall et al.   JOURNAL OF CLINICAL MICROBIOLOGY

The Evolutionary Dynamics of Human Influenza B Virus

(2008) Rubing Chen et al.   JOURNAL OF MOLECULAR EVOLUTION

Crystal Structure of Unliganded Influenza B Virus Hemagglutinin

(2008) Q. Wang et al.   JOURNAL OF VIROLOGY

Smooth Skyride through a Rough Skyline: Bayesian Coalescent-Based Inference of Population Dynamics

(2008) V. N. Minin et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genomic and epidemiological dynamics of human influenza A virus

(2008) Andrew Rambaut et al.   NATURE

Capturing escape in infectious disease dynamics

(2008) S COBEY et al.   TRENDS IN ECOLOGY & EVOLUTION