Development of a tissue-specific ribosome profiling approach in Drosophila enables genome-wide evaluation of translational adaptations

Extended Synaptotagmin Localizes to Presynaptic ER and Promotes Neurotransmission and Synaptic Growth inDrosophila

(2017) Koto Kikuma et al.   GENETICS

Homeostatic plasticity can be induced and expressed to restore synaptic strength at neuromuscular junctions undergoing ALS-related degeneration

(2017) Sarah Perry et al.   HUMAN MOLECULAR GENETICS

Input-Specific Plasticity and Homeostasis at the Drosophila Larval Neuromuscular Junction

(2017) Zachary L. Newman et al.   NEURON

MicroRNA-92a is a circadian modulator of neuronal excitability in Drosophila

(2017) Xiao Chen et al.   Nature Communications

Disparate Postsynaptic Induction Mechanisms Ultimately Converge to Drive the Retrograde Enhancement of Presynaptic Efficacy

(2017) Pragya Goel et al.   Cell Reports

Extended Synaptotagmin Localizes to Presynaptic ER and Promotes Neurotransmission and Synaptic Growth inDrosophila

(2017) Koto Kikuma et al.   GENETICS

Plastid: nucleotide-resolution analysis of next-generation sequencing and genomics data

(2016) Joshua G. Dunn et al.   BMC GENOMICS

On the Dependency of Cellular Protein Levels on mRNA Abundance

(2016) Yansheng Liu et al.   CELL

A decade of the anaphase-promoting complex in the nervous system

(2016) Ju Huang et al.   GENES & DEVELOPMENT

Eyes on Translation

(2016) Marina Chekulaeva et al.   MOLECULAR CELL

Acute Fasting Regulates Retrograde Synaptic Enhancement through a 4E-BP-Dependent Mechanism

(2016) Grant Kauwe et al.   NEURON

LRRK2 regulates retrograde synaptic compensation at the Drosophila neuromuscular junction

(2016) Jay Penney et al.   Nature Communications

The dynamic transcriptional and translational landscape of the model antibiotic producer Streptomyces coelicolor A3(2)

(2016) Yujin Jeong et al.   Nature Communications

Rapid Changes in the Translatome during the Conversion of Growth Cones to Synaptic Terminals

(2016) Kelvin Xi Zhang et al.   Cell Reports

Genome-wide identification of neuronal activity-regulated genes in Drosophila

(2016) Xiao Chen et al.   eLife

Metabolic clock generates nutrient anticipation rhythms in mTOR signaling

(2016) Rohini V. Khapre et al.   Aging-US

The Biology of Proteostasis in Aging and Disease

(2015) Johnathan Labbadia et al.   Annual Review of Biochemistry

Homeostatic Control of Presynaptic Neurotransmitter Release

(2015) Graeme W. Davis et al.   Annual Review of Physiology

REPTOR and REPTOR-BP Regulate Organismal Metabolism and Transcription Downstream of TORC1

(2015) Marcel Tiebe et al.   DEVELOPMENTAL CELL

Transmission, Development, and Plasticity of Synapses

(2015) Kathryn P. Harris et al.   GENETICS

The translational regulator Cup controls NMJ presynaptic terminal morphology

(2015) Kaushiki P. Menon et al.   MOLECULAR AND CELLULAR NEUROSCIENCE

Proteostasis and aging

(2015) Susmita Kaushik et al.   NATURE MEDICINE

Ribosome profiling reveals the what, when, where and how of protein synthesis

(2015) Gloria A. Brar et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Circadian and feeding rhythms differentially affect rhythmic mRNA transcription and translation in mouse liver

(2015) Florian Atger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multiple repressive mechanisms in the hippocampus during memory formation

(2015) J. Cho et al.   SCIENCE

Transmission, Development, and Plasticity of Synapses

(2015) Kathryn P. Harris et al.   GENETICS

Quantifying Absolute Protein Synthesis Rates Reveals Principles Underlying Allocation of Cellular Resources

(2014) Gene-Wei Li et al.   CELL

Chemical mutagens, transposons, and transgenes to interrogate gene function in Drosophila melanogaster

(2014) Koen J.T. Venken et al.   METHODS

Coordinated regulation of protein synthesis and degradation by mTORC1

(2014) Yinan Zhang et al.   NATURE

Diversity and dynamics of the Drosophila transcriptome

(2014) James B. Brown et al.   NATURE

Cell type–specific mRNA purification by translating ribosome affinity purification (TRAP)

(2014) Myriam Heiman et al.   Nature Protocols

Proteostasis impairment in protein-misfolding and -aggregation diseases

(2014) Mark S. Hipp et al.   TRENDS IN CELL BIOLOGY

Regulation of mTORC1 by amino acids

(2014) Liron Bar-Peled et al.   TRENDS IN CELL BIOLOGY

Structures of the human and Drosophila 80S ribosome

(2013) Andreas M. Anger et al.   NATURE

Homeostatic plasticity at the Drosophila neuromuscular junction

(2013) C. Andrew Frank   NEUROPHARMACOLOGY

Translational Profiling of Clock Cells Reveals Circadianly Synchronized Protein Synthesis

(2013) Yanmei Huang et al.   PLOS BIOLOGY

Development and plasticity of the Drosophila larval neuromuscular junction

(2013) Kaushiki P. Menon et al.   Wiley Interdisciplinary Reviews-Developmental Biology

LST8 Regulates Cell Growth via Target-of-Rapamycin Complex 2 (TORC2)

(2012) T. Wang et al.   MOLECULAR AND CELLULAR BIOLOGY

The anti-Shine–Dalgarno sequence drives translational pausing and codon choice in bacteria

(2012) Gene-Wei Li et al.   NATURE

A unifying model for mTORC1-mediated regulation of mRNA translation

(2012) Carson C. Thoreen et al.   NATURE

The translational landscape of mTOR signalling steers cancer initiation and metastasis

(2012) Andrew C. Hsieh et al.   NATURE

The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments

(2012) Nicholas T Ingolia et al.   Nature Protocols

TOR Is Required for the Retrograde Regulation of Synaptic Homeostasis at the Drosophila Neuromuscular Junction

(2012) Jay Penney et al.   NEURON

A Versatile Method for Cell-Specific Profiling of Translated mRNAs in Drosophila

(2012) Amanda Thomas et al.   PLoS One

Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes

(2011) Nicholas T. Ingolia et al.   CELL

Rab3-GAP Controls the Progression of Synaptic Homeostasis at a Late Stage of Vesicle Release

(2011) Martin Müller et al.   NEURON

Enhancer-driven membrane markers for analysis of nonautonomous mechanisms reveal neuron-glia interactions in Drosophila

(2011) C. Han et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nutrient starvation elicits an acute autophagic response mediated by Ulk1 dephosphorylation and its subsequent dissociation from AMPK

(2011) L. Shang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Structure of the Eukaryotic Ribosome at 3.0 A Resolution

(2011) A. Ben-Shem et al.   SCIENCE

The Drosophila melanogaster transcriptome by paired-end RNA sequencing

(2010) B. Daines et al.   GENOME RESEARCH

Translational Regulation of Gene Expression during Conditions of Cell Stress

(2010) Keith A. Spriggs et al.   MOLECULAR CELL

RNA sequencing: advances, challenges and opportunities

(2010) Fatih Ozsolak et al.   NATURE REVIEWS GENETICS

HSP90 at the hub of protein homeostasis: emerging mechanistic insights

(2010) Mikko Taipale et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

The mechanism of eukaryotic translation initiation and principles of its regulation

(2010) Richard J. Jackson et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Cell-type-specific isolation of ribosome-associated mRNA from complex tissues

(2009) E. Sanz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Schizophrenia Susceptibility Gene dysbindin Controls Synaptic Homeostasis

(2009) D. K. Dickman et al.   SCIENCE

Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling

(2009) N. T. Ingolia et al.   SCIENCE

A Translational Profiling Approach for the Molecular Characterization of CNS Cell Types

(2008) Myriam Heiman et al.   CELL

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS