An Arabidopsis Natural Epiallele Maintained by a Feed-Forward Silencing Loop between Histone and DNA

Plant Transgenerational Epigenetics

(2016) Leandro Quadrana et al.   Annual Review of Genetics

A Tunable Mechanism Determines the Duration of the Transgenerational Small RNA Inheritance in C. elegans

(2016) Leah Houri-Ze’evi et al.   CELL

Methylation interactions inArabidopsishybrids require RNA-directed DNA methylation and are influenced by genetic variation

(2016) Qingzhu Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RNA-Directed DNA Methylation: The Evolution of a Complex Epigenetic Pathway in Flowering Plants

(2015) Marjori A. Matzke et al.   Annual Review of Plant Biology

Requirement of CHROMOMETHYLASE3 for somatic inheritance of the spontaneous tomato epimutation Colourless non-ripening

(2015) Weiwei Chen et al.   Scientific Reports

DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation

(2015) Manu J Dubin et al.   eLife

Transgenerational Epigenetic Inheritance: Myths and Mechanisms

(2014) Edith Heard et al.   CELL

Mechanism of DNA Methylation-Directed Histone Methylation by KRYPTONITE

(2014) Jiamu Du et al.   MOLECULAR CELL

Extensivecis-Regulatory Variation Robust to Environmental Perturbation inArabidopsis

(2014) Francisco A. Cubillos et al.   PLANT CELL

Identification of Enzymes for Adenosine-to-Inosine Editing and Discovery of Cytidine-to-Uridine Editing in Nucleus-Encoded Transfer RNAs of Arabidopsis

(2014) W. Zhou et al.   PLANT PHYSIOLOGY

SHOOT GROWTH1 Maintains Arabidopsis Epigenomes by Regulating IBM1

(2014) Vincent Coustham et al.   PLoS One

Natural CMT2 Variation Is Associated With Genome-Wide Methylation Changes and Temperature Seasonality

(2014) Xia Shen et al.   PLoS Genetics

viRome: an R package for the visualization and analysis of viral small RNA sequence datasets

(2013) M. Watson et al.   BIOINFORMATICS

Patterns of population epigenomic diversity

(2013) Robert J. Schmitz et al.   NATURE

Extensive Natural Epigenetic Variation at a De Novo Originated Gene

(2013) Amanda Bortolini Silveira et al.   PLoS Genetics

Dual Binding of Chromomethylase Domains to H3K9me2-Containing Nucleosomes Directs DNA Methylation in Plants

(2012) Jiamu Du et al.   CELL

Rapid Establishment of Genetic Incompatibility through Natural Epigenetic Variation

(2012) Stéphanie Durand et al.   CURRENT BIOLOGY

Epigenetic variation: origin and transgenerational inheritance

(2012) Claude Becker et al.   CURRENT OPINION IN PLANT BIOLOGY

An alternative telomerase RNA in Arabidopsis modulates enzyme activity in response to DNA damage

(2012) C. Cifuentes-Rojas et al.   GENES & DEVELOPMENT

Genome-Wide Analysis of DNA Methylation and Gene Expression Changes in Two Arabidopsis Ecotypes and Their Reciprocal Hybrids

(2012) H. Shen et al.   PLANT CELL

RNAi-independent de novo DNA methylation revealed in Arabidopsis mutants of chromatin remodeling gene DDM1

(2012) Taku Sasaki et al.   PLANT JOURNAL

The Inheritance Pattern of 24 nt siRNA Clusters in Arabidopsis Hybrids Is Influenced by Proximity to Transposable Elements

(2012) Ying Li et al.   PLoS One

Extraordinary transgressive phenotypes of hybrid tomato are influenced by epigenetics and small silencing RNAs

(2011) Padubidri V Shivaprasad et al.   EMBO JOURNAL

Molecular Foundations of Reproductive Lethality in Arabidopsis thaliana

(2011) Rosanna Muralla et al.   PLoS One

Changes in 24-nt siRNA levels in Arabidopsis hybrids suggest an epigenetic contribution to hybrid vigor

(2011) M. Groszmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An Arabidopsis jmjC domain protein protects transcribed genes from DNA methylation at CHG sites

(2009) Asuka Miura et al.   EMBO JOURNAL

A transposon-induced epigenetic change leads to sex determination in melon

(2009) Antoine Martin et al.   NATURE

QTL Mapping in New Arabidopsis thaliana Advanced Intercross-Recombinant Inbred Lines

(2009) Sureshkumar Balasubramanian et al.   PLoS One

Kismeth: Analyzer of plant methylation states through bisulfite sequencing

(2008) Eyal Gruntman et al.   BMC BIOINFORMATICS

Control of Genic DNA Methylation by a jmjC Domain-Containing Protein in Arabidopsis thaliana

(2008) H. Saze et al.   SCIENCE