TFAP2 paralogs regulate melanocyte differentiation in parallel with MITF

MEMO1 drives cranial endochondral ossification and palatogenesis

(2016) Eric Van Otterloo et al.   DEVELOPMENTAL BIOLOGY

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update

(2016) Enis Afgan et al.   NUCLEIC ACIDS RESEARCH

A zebrafish melanoma model reveals emergence of neural crest identity during melanoma initiation

(2016) C. K. Kaufman et al.   SCIENCE

Signaling Networks among Stem Cell Precursors, Transit-Amplifying Progenitors, and their Niche in Developing Hair Follicles

(2016) Amélie Rezza et al.   Cell Reports

An Integrated Transcriptome Atlas of Embryonic Hair Follicle Progenitors, Their Niche, and the Developing Skin

(2015) Rachel Sennett et al.   DEVELOPMENTAL CELL

Putting chromatin in its place: the pioneer factor NeuroD1 modulates chromatin state to drive cell fate decisions

(2015) A. Glahs et al.   EMBO JOURNAL

Integrative analysis of 111 reference human epigenomes

(2015) Anshul Kundaje et al.   NATURE

What are super-enhancers?

(2015) Sebastian Pott et al.   NATURE GENETICS

PANTHER version 10: expanded protein families and functions, and analysis tools

(2015) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

Distinct Transcriptional Programs Underlie Sox9 Regulation of the Mammalian Chondrocyte

(2015) Shinsuke Ohba et al.   Cell Reports

Transcription factor MITF and remodeller BRG1 define chromatin organisation at regulatory elements in melanoma cells

(2015) Patrick Laurette et al.   eLife

MITF in melanoma: mechanisms behind its expression and activity

(2014) Mariusz L. Hartman et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Multiple genome modifications by the CRISPR/Cas9 system in zebrafish

(2014) Satoshi Ota et al.   GENES TO CELLS

Enhancer-targeted genome editing selectively blocks innate resistance to oncokinase inhibition

(2014) D. E. Webster et al.   GENOME RESEARCH

Principles of regulatory information conservation between mouse and human

(2014) Yong Cheng et al.   NATURE

Temperature-sensitive splicing ofmitfaby an intron mutation in zebrafish

(2014) Zhiqiang Zeng et al.   Pigment Cell & Melanoma Research

Global view of enhancer-promoter interactome in human cells

(2014) B. He et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Polymorphism in IRF4 Affects Human Pigmentation through a Tyrosinase-Dependent MITF/TFAP2A Pathway

(2013) Christian Praetorius et al.   CELL

Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes

(2013) Warren A. Whyte et al.   CELL

Super-Enhancers in the Control of Cell Identity and Disease

(2013) Denes Hnisz et al.   CELL

MITF, the Janus transcription factor of melanoma

(2013) Dana Koludrovic et al.   Future Oncology

Histone modifications for human epigenome analysis

(2013) Hiroshi Kimura   JOURNAL OF HUMAN GENETICS

Large-scale gene function analysis with the PANTHER classification system

(2013) Huaiyu Mi et al.   Nature Protocols

oca2regulation of chromatophore differentiation and number is cell type specific in zebrafish

(2013) Alisha J. Beirl et al.   Pigment Cell & Melanoma Research

Gene Expression Analysis of Zebrafish Melanocytes, Iridophores, and Retinal Pigmented Epithelium Reveals Indicators of Biological Function and Developmental Origin

(2013) Charles W. Higdon et al.   PLoS One

Evidence for a Retroviral Insertion in TRPM1 as the Cause of Congenital Stationary Night Blindness and Leopard Complex Spotting in the Horse

(2013) Rebecca R. Bellone et al.   PLoS One

Novel Tfap2-mediated control of soxE expression facilitated the evolutionary emergence of the neural crest

(2012) E. Van Otterloo et al.   DEVELOPMENT

Specification of neural crest into sensory neuron and melanocyte lineages

(2012) William J. Pavan et al.   DEVELOPMENTAL BIOLOGY

Restricted leucine zipper dimerization and specificity of DNA recognition of the melanocyte master regulator MITF

(2012) V. Pogenberg et al.   GENES & DEVELOPMENT

Integration of ChIP-seq and machine learning reveals enhancers and a predictive regulatory sequence vocabulary in melanocytes

(2012) D. U. Gorkin et al.   GENOME RESEARCH

Involvement of the mRNA binding protein CRD-BP in the regulation of metastatic melanoma cell proliferation and invasion by hypoxia

(2012) E. A. Craig et al.   JOURNAL OF CELL SCIENCE

ZFIN, the Zebrafish Model Organism Database: increased support for mutants and transgenics

(2012) Douglas G. Howe et al.   NUCLEIC ACIDS RESEARCH

Inferring direct DNA binding from ChIP-seq

(2012) Timothy L. Bailey et al.   NUCLEIC ACIDS RESEARCH

SOX2 modulates levels of MITF in normal human melanocytes, and melanoma lines in vitro

(2012) Flavio Cimadamore et al.   Pigment Cell & Melanoma Research

Slc45a2 and V-ATPase are regulators of melanosomal pH homeostasis in zebrafish, providing a mechanism for human pigment evolution and disease

(2012) Christopher M. Dooley et al.   Pigment Cell & Melanoma Research

ALDH1A Isozymes are Markers of Human Melanoma Stem Cells and Potential Therapeutic Targets

(2012) Yuchun Luo et al.   STEM CELLS

MEME-ChIP: motif analysis of large DNA datasets

(2011) Philip Machanick et al.   BIOINFORMATICS

Fine-mapping and mutation analysis of TRPM1: a candidate gene for leopard complex (LP) spotting and congenital stationary night blindness in horses

(2011) R. R. Bellone et al.   Briefings in Functional Genomics

Sox2 and Mitf cross-regulatory interactions consolidate progenitor and melanocyte lineages in the cranial neural crest

(2011) I. Adameyko et al.   DEVELOPMENT

The transcription factors AP-2β and AP-2α are required for survival of sympathetic progenitors and differentiated sympathetic neurons

(2011) Mirko Schmidt et al.   DEVELOPMENTAL BIOLOGY

Phosphoproteomic Screen Identifies Potential Therapeutic Targets in Melanoma

(2011) K. Tworkoski et al.   MOLECULAR CANCER RESEARCH

A picture of Mitf in melanoma immortality

(2011) C R Goding   ONCOGENE

Essential role of microphthalmia transcription factor for DNA replication, mitosis and genomic stability in melanoma

(2011) T Strub et al.   ONCOGENE

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data

(2010) Robert C McLeay et al.   BMC BIOINFORMATICS

Interplay between Foxd3 and Mitf regulates cell fate plasticity in the zebrafish neural crest

(2010) Kevin Curran et al.   DEVELOPMENTAL BIOLOGY

mitfa is required at multiple stages of melanocyte differentiation but not to establish the melanocyte stem cell

(2010) Stephen L. Johnson et al.   DEVELOPMENTAL BIOLOGY

“Transcription physiology” of pigment formation in melanocytes: central role of MITF

(2010) Jiri Vachtenheim et al.   EXPERIMENTAL DERMATOLOGY

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

GREAT improves functional interpretation of cis-regulatory regions

(2010) Cory Y McLean et al.   NATURE BIOTECHNOLOGY

The NIH Roadmap Epigenomics Mapping Consortium

(2010) Bradley E Bernstein et al.   NATURE BIOTECHNOLOGY

seqMINER: an integrated ChIP-seq data interpretation platform

(2010) Tao Ye et al.   NUCLEIC ACIDS RESEARCH

Five-Vertebrate ChIP-seq Reveals the Evolutionary Dynamics of Transcription Factor Binding

(2010) D. Schmidt et al.   SCIENCE

Differentiation of Zebrafish Melanophores Depends on Transcription Factors AP2 Alpha and AP2 Epsilon

(2010) Eric Van Otterloo et al.   PLoS Genetics

Calcium homeostasis in human melanocytes: role of transient receptor potential melastatin 1 (TRPM1) and its regulation by ultraviolet light

(2009) Sulochana Devi et al.   AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY

Expression and functional analysis of the WAP four disulfide core domain 1 gene in human melanoma

(2009) Suhu Liu et al.   CLINICAL & EXPERIMENTAL METASTASIS

FOXD3 regulates the lineage switch between neural crest-derived glial cells and pigment cells by repressing MITF through a non-canonical mechanism

(2009) A. J. Thomas et al.   DEVELOPMENT

Foxd3 controls melanophore specification in the zebrafish neural crest by regulation of Mitf

(2009) Kevin Curran et al.   DEVELOPMENTAL BIOLOGY

Histone modifications at human enhancers reflect global cell-type-specific gene expression

(2009) Nathaniel D. Heintzman et al.   NATURE

A robust and high-throughput Cre reporting and characterization system for the whole mouse brain

(2009) Linda Madisen et al.   NATURE NEUROSCIENCE

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Comparison of melanoblast expression patterns identifies distinct classes of genes

(2009) Stacie K. Loftus et al.   Pigment Cell & Melanoma Research

TRPM1 Forms Ion Channels Associated with Melanin Content in Melanocytes

(2009) E. Oancea et al.   Science Signaling

AP-2 factors act in concert with Notch to orchestrate terminal differentiation in skin epidermis

(2008) Xuan Wang et al.   JOURNAL OF CELL BIOLOGY

Overexpression of mRNA-binding protein CRD-BP in malignant melanomas

(2008) I Elcheva et al.   ONCOGENE