Genetic Variation in the Social Environment Contributes to Health and Disease

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

RNA-Seq Alignment to Individualized Genomes Improves Transcript Abundance Estimates in Multiparent Populations

(2014) Steven C. Munger et al.   GENETICS

Testing the key assumption of heritability estimates based on genome-wide genetic relatedness

(2014) Dalton Conley et al.   JOURNAL OF HUMAN GENETICS

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Single-step methods for genomic evaluation in pigs

(2012) O. F. Christensen et al.   Animal

Indirect Genetic Effects for Survival in Domestic Chickens (Gallus gallus) Are Magnified in Crossbred Genotypes and Show a Parent-of-Origin Effect

(2012) K. Peeters et al.   GENETICS

Indirect genetic effects and the genetic bases of social dominance: evidence from cattle

(2012) C Sartori et al.   HEREDITY

Direct and associative effects for androstenone and genetic correlations with backfat and growth in entire male pigs1

(2012) N. Duijvesteijn et al.   JOURNAL OF ANIMAL SCIENCE

Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses

(2012) Oliver Stegle et al.   Nature Protocols

Bias in genomic predictions for populations under selection

(2011) Z. G. VITEZICA et al.   Genetics Research

Efficient computation of the genomic relationship matrix and other matrices used in single-step evaluation

(2011) I. Aguilar et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Indirect genetics effects and evolutionary constraint: an analysis of social dominance in red deer, Cervus elaphus

(2011) A. J. WILSON et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Mouse genomic variation and its effect on phenotypes and gene regulation

(2011) Thomas M. Keane et al.   NATURE

Heritability of Parkinson disease in Swedish twins: a longitudinal study

(2011) Karin Wirdefeldt et al.   NEUROBIOLOGY OF AGING

SAMStat: monitoring biases in next generation sequencing data

(2010) T. Lassmann et al.   BIOINFORMATICS

Estimating Indirect Genetic Effects: Precision of Estimates and Optimum Designs

(2010) P. Bijma   GENETICS

Hot topic: A unified approach to utilize phenotypic, full pedigree, and genomic information for genetic evaluation of Holstein final score1

(2010) I. Aguilar et al.   JOURNAL OF DAIRY SCIENCE

Variance component model to account for sample structure in genome-wide association studies

(2010) Hyun Min Kang et al.   NATURE GENETICS

High resolution mapping of expression QTLs in heterogeneous stock mice in multiple tissues

(2009) G.-J. Huang et al.   GENOME RESEARCH

A relationship matrix including full pedigree and genomic information

(2009) A. Legarra et al.   JOURNAL OF DAIRY SCIENCE

Finding the missing heritability of complex diseases

(2009) Teri A. Manolio et al.   NATURE

A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data

(2009) Nuno L. Barbosa-Morais et al.   NUCLEIC ACIDS RESEARCH

What are maternal effects (and what are they not)?

(2009) J. B Wolf et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

lumi: a pipeline for processing Illumina microarray

(2008) P. Du et al.   BIOINFORMATICS

The Contribution of Social Effects to Heritable Variation in Finishing Traits of Domestic Pigs (Sus scrofa)

(2008) R. Bergsma et al.   GENETICS

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE