Differential paralog divergence modulates genome evolution across yeast species

Purifying selection acts on coding and non-coding sequences of paralogous genes in Arabidopsis thaliana

(2016) Robert D. Hoffmann et al.   BMC GENOMICS

Comprehensive Analysis of the SUL1 Promoter of Saccharomyces cerevisiae

(2016) Matthew S. Rich et al.   GENETICS

Comprehensive Analysis of the SUL1 Promoter of Saccharomyces cerevisiae

(2016) Matthew S. Rich et al.   GENETICS

Accumulation and metabolism of selenium by yeast cells

(2015) Marek Kieliszek et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Beyond the Whole-Genome Duplication: Phylogenetic Evidence for an Ancient Interspecies Hybridization in the Baker's Yeast Lineage

(2015) Marina Marcet-Houben et al.   PLOS BIOLOGY

Origin-Dependent Inverted-Repeat Amplification: Tests of a Model for Inverted DNA Amplification

(2015) Bonita J. Brewer et al.   PLoS Genetics

Experimental microbial evolution: history and conceptual underpinnings

(2014) Julian Adams et al.   GENOMICS

Genome dynamics during experimental evolution

(2013) Jeffrey E. Barrick et al.   NATURE REVIEWS GENETICS

The Dynamics of Diverse Segmental Amplifications in Populations of Saccharomyces cerevisiae Adapting to Strong Selection

(2013) Celia Payen et al.   G3-Genes Genomes Genetics

Conservation of replication timing reveals global and local regulation of replication origin activity

(2012) C. A. Muller et al.   GENOME RESEARCH

Maintaining replication origins in the face of genomic change

(2012) S. C. Di Rienzi et al.   GENOME RESEARCH

Transcriptional divergence plays a role in the rewiring of protein interaction networks after gene duplication

(2012) Isabelle Gagnon-Arsenault et al.   Journal of Proteomics

Evolutionary insight from whole-genome sequencing of experimentally evolved microbes

(2012) JEREMY R. DETTMAN et al.   MOLECULAR ECOLOGY

Epistasis as the primary factor in molecular evolution

(2012) Michael S. Breen et al.   NATURE

Experimental evolution

(2012) Tadeusz J. Kawecki et al.   TRENDS IN ECOLOGY & EVOLUTION

Reconstruction of Ancestral Metabolic Enzymes Reveals Molecular Mechanisms Underlying Evolutionary Innovation through Gene Duplication

(2012) Karin Voordeckers et al.   PLOS BIOLOGY

Divergence of the Yeast Transcription Factor FZF1 Affects Sulfite Resistance

(2012) Elizabeth K. Engle et al.   PLoS Genetics

Parallel bacterial evolution within multiple patients identifies candidate pathogenicity genes

(2011) Tami D Lieberman et al.   NATURE GENETICS

Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast

(2011) D. Libkind et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Negative Epistasis Between Beneficial Mutations in an Evolving Bacterial Population

(2011) A. I. Khan et al.   SCIENCE

The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources for the Saccharomyces sensu stricto Genus

(2011) Devin R. Scannell et al.   G3-Genes Genomes Genetics

A Tradeoff Drives the Evolution of Reduced Metal Resistance in Natural Populations of Yeast

(2011) Shang-Lin Chang et al.   PLoS Genetics

Origin-Dependent Inverted-Repeat Amplification: A Replication-Based Model for Generating Palindromic Amplicons

(2011) Bonita J. Brewer et al.   PLoS Genetics

Whole-genome sequencing of a laboratory-evolved yeast strain

(2010) Carlos L Araya et al.   BMC GENOMICS

Genetic interactions reveal the evolutionary trajectories of duplicate genes

(2010) Benjamin VanderSluis et al.   Molecular Systems Biology

Yeast evolutionary genomics

(2010) Bernard Dujon   NATURE REVIEWS GENETICS

Evidence for widespread adaptive evolution of gene expression in budding yeast

(2010) H. B. Fraser et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Genetic Landscape of a Cell

(2010) M. Costanzo et al.   SCIENCE

Adaptation genomics: the next generation

(2010) Jessica Stapley et al.   TRENDS IN ECOLOGY & EVOLUTION

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Telomere behavior in a hybrid yeast

(2009) Ona C Martin et al.   CELL RESEARCH

Genome evolution and adaptation in a long-term experiment with Escherichia coli

(2009) Jeffrey E. Barrick et al.   NATURE

Reconstruction of the genome origins and evolution of the hybrid lager yeast Saccharomyces pastorianus

(2008) B. Dunn et al.   GENOME RESEARCH

Experimental evolution: experimental evolution and evolvability

(2008) N Colegrave et al.   HEREDITY

Frequent and Widespread Parallel Evolution of Protein Sequences

(2008) A. Rokas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Turning a hobby into a job: How duplicated genes find new functions

(2008) Gavin C. Conant et al.   NATURE REVIEWS GENETICS

The Repertoire and Dynamics of Evolutionary Adaptations to Controlled Nutrient-Limited Environments in Yeast

(2008) David Gresham et al.   PLoS Genetics

Variations in Stress Sensitivity and Genomic Expression in Diverse S. cerevisiae Isolates

(2008) Daniel J. Kvitek et al.   PLoS Genetics

The genetic basis of parallel and divergent phenotypic responses in evolving populations of Escherichia coli

(2007) E. A Ostrowski et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES