Allelic variants of OsHKT1;1 underlie the divergence between indica and japonica subspecies of rice (Oryza sativa) for root sodium content

OsHKT1;4-mediated Na+ transport in stems contributes to Na+ exclusion from leaf blades of rice at the reproductive growth stage upon salt stress

(2016) Kei Suzuki et al.   BMC PLANT BIOLOGY

The Rice High-Affinity Potassium Transporter1;1 Is Involved in Salt Tolerance and Regulated by an MYB-Type Transcription Factor

(2015) Rong Wang et al.   PLANT PHYSIOLOGY

popart: full-feature software for haplotype network construction

(2015) Jessica W. Leigh et al.   Methods in Ecology and Evolution

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

SNP-Seek database of SNPs derived from 3000 rice genomes

(2014) Nickolai Alexandrov et al.   NUCLEIC ACIDS RESEARCH

Salinity tolerance, Na+ exclusion and allele mining of HKT1;5 in Oryza sativa and O. glaberrima: many sources, many genes, one mechanism?

(2013) John Damien Platten et al.   BMC PLANT BIOLOGY

Functional characterization in Xenopus oocytes of Na+ transport systems from durum wheat reveals diversity among two HKT1;4 transporters

(2013) Siwar Ben Amar et al.   JOURNAL OF EXPERIMENTAL BOTANY

Registration of the Rice Diversity Panel 1 for Genomewide Association Studies

(2013) Georgia C. Eizenga et al.   Journal of Plant Registrations

A map of rice genome variation reveals the origin of cultivated rice

(2012) Xuehui Huang et al.   NATURE

Wheat grain yield on saline soils is improved by an ancestral Na+ transporter gene

(2012) Rana Munns et al.   NATURE BIOTECHNOLOGY

New allelic variants found in key rice salt-tolerance genes: an association study

(2012) Sónia Negrão et al.   PLANT BIOTECHNOLOGY JOURNAL

A Two-Staged Model of Na+ Exclusion in Rice Explained by 3D Modeling of HKT Transporters and Alternative Splicing

(2012) Olivier Cotsaftis et al.   PLoS One

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Recent Updates on Salinity Stress in Rice: From Physiological to Molecular Responses

(2011) S. Negrão et al.   CRITICAL REVIEWS IN PLANT SCIENCES

Over-expression of an Na+- and K+-permeable HKT transporter in barley improves salt tolerance

(2011) Afaq Mian et al.   PLANT JOURNAL

Multivariate analysis of maize disease resistances suggests a pleiotropic genetic basis and implicates a GST gene

(2011) R. J. Wisser et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Targeted association analysis identified japonica rice varieties achieving Na+/K+ homeostasis without the allelic make-up of the salt tolerant indica variety Nona Bokra

(2011) N. Ahmadi et al.   THEORETICAL AND APPLIED GENETICS

Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa

(2011) Keyan Zhao et al.   Nature Communications

Genetic Architecture of Aluminum Tolerance in Rice (Oryza sativa) Determined through Genome-Wide Association Analysis and QTL Mapping

(2011) Adam N. Famoso et al.   PLoS Genetics

Genomic Diversity and Introgression in O. sativa Reveal the Impact of Domestication and Breeding on the Rice Genome

(2010) Keyan Zhao et al.   PLoS One

Characterizing the Saltol Quantitative Trait Locus for Salinity Tolerance in Rice

(2010) Michael J. Thomson et al.   Rice

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Association Mapping: Critical Considerations Shift from Genotyping to Experimental Design

(2009) S. Myles et al.   PLANT CELL

Diversity in Expression Patterns and Functional Properties in the Rice HKT Transporter Family

(2009) M. Jabnoune et al.   PLANT PHYSIOLOGY

HKT transporter-mediated salinity resistance mechanisms in Arabidopsis and monocot crop plants

(2009) Tomoaki Horie et al.   TRENDS IN PLANT SCIENCE

Mechanisms of Salinity Tolerance

(2008) Rana Munns et al.   Annual Review of Plant Biology

Efficient Control of Population Structure in Model Organism Association Mapping

(2008) H. M. Kang et al.   GENETICS