Differential gene expression along the animal-vegetal axis in the ascidian embryo is maintained by a dual functional protein Foxd

Differential temporal control ofFoxa.aandZic-r.bspecifies brain versus notochord fate in the ascidian embryo

(2016) Tatsuro Ikeda et al.   DEVELOPMENT

Tfap2andSox1/2/3cooperatively specify ectodermal fates in ascidian embryos

(2016) Kaoru S. Imai et al.   DEVELOPMENT

A Maternal System Initiating the Zygotic Developmental Program through Combinatorial Repression in the Ascidian Embryo

(2016) Izumi Oda-Ishii et al.   PLoS Genetics

Maternal AP determinants in the Drosophila oocyte and embryo

(2016) Jun Ma et al.   Wiley Interdisciplinary Reviews-Developmental Biology

A Boolean Function for Neural Induction Reveals a Critical Role of Direct Intercellular Interactions in Patterning the Ectoderm of the Ascidian Embryo

(2015) Naoyuki Ohta et al.   PLoS Computational Biology

Guidelines for the nomenclature of genetic elements in tunicate genomes

(2014) Alberto Stolfi et al.   GENESIS

Maternal control of the Drosophila dorsal-ventral body axis

(2014) David S. Stein et al.   Wiley Interdisciplinary Reviews-Developmental Biology

DNA-Binding Specificities of Human Transcription Factors

(2013) Arttu Jolma et al.   CELL

A time delay gene circuit is required for palp formation in the ascidian embryo

(2013) T. Ikeda et al.   DEVELOPMENT

Transcriptional regulation in the early ectodermal lineage of ascidian embryos

(2013) Yosuke Horikawa et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

Multiple Signaling Pathways Coordinate to Induce a Threshold Response in a Chordate Embryo

(2013) Naoyuki Ohta et al.   PLoS Genetics

FGF signaling establishes the anterior border of the Ciona neural tube

(2012) E. Wagner et al.   DEVELOPMENT

Specific domains of FoxD4/5 activate and repress neural transcription factor genes to control the progression of immature neural ectoderm to differentiating neural plate

(2012) Karen M. Neilson et al.   DEVELOPMENTAL BIOLOGY

Differential expression in RNA-seq: A matter of depth

(2011) S. Tarazona et al.   GENOME RESEARCH

doublesex/mab3 related-1 (dmrt1) is essential for development of anterior neural plate derivatives in Ciona

(2010) J. Tresser et al.   DEVELOPMENT

Genomic cis-regulatory networks in the early Ciona intestinalis embryo

(2010) A. Kubo et al.   DEVELOPMENT

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

Emerging properties of animal gene regulatory networks

(2010) Eric H. Davidson   NATURE

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY