Computational identification of the selenocysteine tRNA (tRNASec) in genomes

LokiarchaeotaMarks the Transition between the Archaeal and Eukaryotic Selenocysteine Encoding Systems

(2016) Marco Mariotti et al.   MOLECULAR BIOLOGY AND EVOLUTION

The pathway to GTPase activation of elongation factor SelB on the ribosome

(2016) Niels Fischer et al.   NATURE

Transfer RNAs with novel cloverleaf structures

(2016) Takahito Mukai et al.   NUCLEIC ACIDS RESEARCH

Crystal structures of the human elongation factor eEFSec suggest a non-canonical mechanism for selenocysteine incorporation

(2016) Malgorzata Dobosz-Bartoszek et al.   Nature Communications

Comparative Genomics Reveals New Candidate Genes Involved in Selenium Metabolism in Prokaryotes

(2015) Jie Lin et al.   Genome Biology and Evolution

Evolution of selenophosphate synthetases: emergence and relocation of function through independent duplications and recurrent subfunctionalization

(2015) Marco Mariotti et al.   GENOME RESEARCH

Expansion of Noncanonical V-Arm-Containing tRNAs in Eukaryotes

(2015) Kiyofumi Hamashima et al.   MOLECULAR BIOLOGY AND EVOLUTION

Crystal structure of the full-length bacterial selenocysteine-specific elongation factor SelB

(2015) Yuzuru Itoh et al.   NUCLEIC ACIDS RESEARCH

The genomes of two key bumblebee species with primitive eusocial organization

(2015) Ben M Sadd et al.   GENOME BIOLOGY

Rfam 12.0: updates to the RNA families database

(2014) Eric P. Nawrocki et al.   NUCLEIC ACIDS RESEARCH

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Selenoproteins: Molecular Pathways and Physiological Roles

(2014) Vyacheslav M. Labunskyy et al.   PHYSIOLOGICAL REVIEWS

Adjustments, extinction, and remains of selenocysteine incorporation machinery in the nematode lineage

(2014) L. Otero et al.   RNA

Infernal 1.1: 100-fold faster RNA homology searches

(2013) E. P. Nawrocki et al.   BIOINFORMATICS

Tertiary structure of bacterial selenocysteine tRNA

(2013) Y. Itoh et al.   NUCLEIC ACIDS RESEARCH

SECISearch3 and Seblastian: new tools for prediction of SECIS elements and selenoproteins

(2013) Marco Mariotti et al.   NUCLEIC ACIDS RESEARCH

A Large-Scale, Higher-Level, Molecular Phylogenetic Study of the Insect Order Lepidoptera (Moths and Butterflies)

(2013) Jerome C. Regier et al.   PLoS One

Decameric SelAbullettRNASec Ring Structure Reveals Mechanism of Bacterial Selenocysteine Formation

(2013) Y. Itoh et al.   SCIENCE

Evolution of selenoproteins in the metazoan

(2012) Liang Jiang et al.   BMC GENOMICS

R- chie : a web server and R package for visualizing RNA secondary structures

(2012) Daniel Lai et al.   NUCLEIC ACIDS RESEARCH

Biosynthesis of Selenocysteine, the 21st Amino Acid in the Genetic Code, and a Novel Pathway for Cysteine Biosynthesis

(2012) Anton A. Turanov et al.   Advances in Nutrition

ViennaRNA Package 2.0

(2011) Ronny Lorenz et al.   Algorithms for Molecular Biology

Inhibition of selenocysteine tRNA[Ser]Sec aminoacylation provides evidence that aminoacylation is required for regulatory methylation of this tRNA

(2011) Jin Young Kim et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Pol III binding in six mammals shows conservation among amino acid isotypes despite divergence among tRNA genes

(2011) Claudia Kutter et al.   NATURE GENETICS

Selenoprofiles: profile-based scanning of eukaryotic genome sequences for selenoprotein genes

(2010) M. Mariotti et al.   BIOINFORMATICS

In silico identification of the sea squirt selenoproteome

(2010) Liang Jiang et al.   BMC GENOMICS

Structural Basis for the Major Role of O-Phosphoseryl-tRNA Kinase in the UGA-Specific Encoding of Selenocysteine

(2010) Shiho Chiba et al.   MOLECULAR CELL

C-terminal domain of archaeal O -phosphoseryl-tRNA kinase displays large-scale motion to bind the 7-bp D-stem of archaeal tRNA Sec

(2010) R. Lynn Sherrer et al.   NUCLEIC ACIDS RESEARCH

Genome Sequence of the Pea Aphid Acyrthosiphon pisum

(2010)   PLOS BIOLOGY

The selenium to selenoprotein pathway in eukaryotes: More molecular partners than anticipated

(2009) Christine Allmang et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

Eukaryotic selenoproteins and selenoproteomes

(2009) Alexey V. Lobanov et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

Distinct genetic code expansion strategies for selenocysteine and pyrrolysine are reflected in different aminoacyl-tRNA formation systems

(2009) Jing Yuan et al.   FEBS LETTERS

Crystal structure of human selenocysteine tRNA

(2009) Yuzuru Itoh et al.   NUCLEIC ACIDS RESEARCH

Structure of a tRNA-dependent kinase essential for selenocysteine decoding

(2009) Y. Araiso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Human SepSecS-tRNASec Complex Reveals the Mechanism of Selenocysteine Formation

(2009) S. Palioura et al.   SCIENCE

In silico identification of genes involved in selenium metabolism: evidence for a third selenium utilization trait

(2008) Yan Zhang et al.   BMC GENOMICS

Divergence of selenocysteine tRNA recognition by archaeal and eukaryotic O -phosphoseryl-tRNA Sec kinase

(2008) R. Lynn Sherrer et al.   NUCLEIC ACIDS RESEARCH

tRNAdb 2009: compilation of tRNA sequences and tRNA genes

(2008) F. Juhling et al.   NUCLEIC ACIDS RESEARCH

Relaxation of Selective Constraints Causes Independent Selenoprotein Extinction in Insect Genomes

(2008) Charles E. Chapple et al.   PLoS One