Transient chromatin properties revealed by polymer models and stochastic simulations constructed from Chromosomal Capture data

Structural Fluctuations of the Chromatin Fiber within Topologically Associating Domains

(2016) Guido Tiana et al.   BIOPHYSICAL JOURNAL

Nuclear Architecture: Past and Future Tense

(2016) Susan M. Gasser   TRENDS IN CELL BIOLOGY

Analysis of Single Locus Trajectories for Extracting In Vivo Chromatin Tethering Interactions

(2015) Assaf Amitai et al.   PLoS Computational Biology

A statistical approach for inferring the 3D structure of the genome

(2014) N. Varoquaux et al.   BIOINFORMATICS

Predictive Polymer Modeling Reveals Coupled Fluctuations in Chromosome Conformation and Transcription

(2014) Luca Giorgetti et al.   CELL

Models of chromosome structure

(2014) Mario Nicodemi et al.   CURRENT OPINION IN CELL BIOLOGY

Topologically associating domains are stable units of replication-timing regulation

(2014) Benjamin D. Pope et al.   NATURE

Large-scale reconstruction of 3D structures of human chromosomes from chromosomal contact data

(2014) Tuan Trieu et al.   NUCLEIC ACIDS RESEARCH

Two ways to fold the genome during the cell cycle: insights obtained with chromosome conformation capture

(2014) Job Dekker   Epigenetics & Chromatin

Persistent super-diffusive motion of Escherichia coli chromosomal loci

(2014) Avelino Javer et al.   Nature Communications

Chromatin Movement in the Maintenance of Genome Stability

(2013) Vincent Dion et al.   CELL

Checkpoint kinases and the INO80 nucleosome remodeling complex enhance global chromatin mobility in response to DNA damage

(2013) A. Seeber et al.   GENES & DEVELOPMENT

High-throughput chromatin motion tracking in living yeast reveals the flexibility of the fiber throughout the genome

(2013) Houssam Hajjoul et al.   GENOME RESEARCH

Encounter dynamics of a small target by a polymer diffusing in a confined domain

(2013) A. Amitai et al.   JOURNAL OF CHEMICAL PHYSICS

Single-cell Hi-C reveals cell-to-cell variability in chromosome structure

(2013) Takashi Nagano et al.   NATURE

Polymer model with long-range interactions: Analysis and applications to the chromatin structure

(2013) A. Amitai et al.   PHYSICAL REVIEW E

Short-time movement of E. coli chromosomal loci depends on coordinate and subcellular localization

(2013) Avelino Javer et al.   Nature Communications

Topological domains in mammalian genomes identified by analysis of chromatin interactions

(2012) Jesse R. Dixon et al.   NATURE

Spatial partitioning of the regulatory landscape of the X-inactivation centre

(2012) Elphège P. Nora et al.   NATURE

Computation of the Mean First-Encounter Time Between the Ends of a Polymer Chain

(2012) A. Amitai et al.   PHYSICAL REVIEW LETTERS

Expression-Dependent Folding of Interphase Chromatin

(2012) Hansjoerg Jerabek et al.   PLoS One

Complexity of chromatin folding is captured by the strings and binders switch model

(2012) M. Barbieri et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A three-dimensional model of the yeast genome

(2010) Zhijun Duan et al.   NATURE

Subdiffusive motion of a polymer composed of subdiffusive monomers

(2010) Stephanie C. Weber et al.   PHYSICAL REVIEW E

Bacterial Chromosomal Loci Move Subdiffusively through a Viscoelastic Cytoplasm

(2010) Stephanie C. Weber et al.   PHYSICAL REVIEW LETTERS

Diffusion-Driven Looping Provides a Consistent Framework for Chromatin Organization

(2010) Manfred Bohn et al.   PLoS One

Spatial and Topological Organization of DNA Chains Induced by Gene Co-localization

(2010) Ivan Junier et al.   PLoS Computational Biology

CTCF: Master Weaver of the Genome

(2009) Jennifer E. Phillips et al.   CELL

Lab-on-Chip for fast 3D particle tracking in living cells

(2009) Houssam Hajjoul et al.   LAB ON A CHIP

Transient Anomalous Diffusion of Telomeres in the Nucleus of Mammalian Cells

(2009) I. Bronstein et al.   PHYSICAL REVIEW LETTERS