mRNA/protein sequence complementarity and its determinants: The impact of affinity scales

On the Dependency of Cellular Protein Levels on mRNA Abundance

(2016) Yansheng Liu et al.   CELL

Comprehensive Identification of RNA-Binding Domains in Human Cells

(2016) Alfredo Castello et al.   MOLECULAR CELL

Large-Scale Quantitative Assessment of Binding Preferences in Protein–Nucleic Acid Complexes

(2015) Dávid Jakubec et al.   Journal of Chemical Theory and Computation

Malleable nature of mRNA-protein compositional complementarity and its functional significance

(2015) Mario Hlevnjak et al.   NUCLEIC ACIDS RESEARCH

Interaction preferences between nucleobase mimetics and amino acids in aqueous solutions

(2015) Matea Hajnic et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs

(2015) Benedikt M. Beckmann et al.   Nature Communications

Functional Advantages of Conserved Intrinsic Disorder in RNA-Binding Proteins

(2015) Mihaly Varadi et al.   PLoS One

Computational analysis of amino acids and their sidechain analogs in crowded solutions of RNA nucleobases with implications for the mRNA–protein complementarity hypothesis

(2014) Matea Hajnic et al.   NUCLEIC ACIDS RESEARCH

Absolute binding-free energies between standard RNA/DNA nucleobases and amino-acid sidechain analogs in different environments

(2014) Anita de Ruiter et al.   NUCLEIC ACIDS RESEARCH

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

'Oming in on RNA–protein interactions

(2014) John L Rinn et al.   GENOME BIOLOGY

Evidence of direct complementary interactions between messenger RNAs and their cognate proteins

(2013) A. A. Polyansky et al.   NUCLEIC ACIDS RESEARCH

Proteome-wide analysis reveals clues of complementary interactions between mRNAs and their cognate proteins as the physicochemical foundation of the genetic code

(2013) Anton A Polyansky et al.   RNA Biology

Insights into RNA Biology from an Atlas of Mammalian mRNA-Binding Proteins

(2012) Alfredo Castello et al.   CELL

The mRNA-Bound Proteome and Its Global Occupancy Profile on Protein-Coding Transcripts

(2012) Alexander G. Baltz et al.   MOLECULAR CELL

Sequence signatures of direct complementarity between mRNAs and cognate proteins on multiple levels

(2012) Mario Hlevnjak et al.   NUCLEIC ACIDS RESEARCH

Prediction of dinucleotide-specific RNA-binding sites in proteins

(2011) Michael Fernandez et al.   BMC BIOINFORMATICS

Origin and evolution of the genetic code: The universal enigma

(2009) Eugene V. Koonin et al.   IUBMB LIFE

RNA–Amino Acid Binding: A Stereochemical Era for the Genetic Code

(2009) Michael Yarus et al.   JOURNAL OF MOLECULAR EVOLUTION

On the Physical Basis of the Amino Acid Polar Requirement

(2008) Damien C. Mathew et al.   JOURNAL OF MOLECULAR EVOLUTION