Statistics of Infima and Stopping Times of Entropy Production and Applications to Active Molecular Processes

Multiple-scale stochastic processes: Decimation, averaging and beyond

(2017) Stefano Bo et al.   PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS

Cycle symmetries and circulation fluctuations for discrete-time and continuous-time Markov chains

(2016) Chen Jia et al.   ANNALS OF APPLIED PROBABILITY

Waiting for rare entropic fluctuations

(2016) Keiji Saito et al.   EPL

Entropy production in mesoscopic stochastic thermodynamics: nonequilibrium kinetic cycles driven by chemical potentials, temperatures, and mechanical forces

(2016) Hong Qian et al.   JOURNAL OF PHYSICS-CONDENSED MATTER

Dissipation Bounds All Steady-State Current Fluctuations

(2016) Todd R. Gingrich et al.   PHYSICAL REVIEW LETTERS

Mechanisms of backtrack recovery by RNA polymerases I and II

(2016) Ana Lisica et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Landscape and flux theory of non-equilibrium dynamical systems with application to biology

(2015) Jin Wang   ADVANCES IN PHYSICS

Thermodynamic limits to information harvesting by sensory systems

(2015) Stefano Bo et al.   JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT

Decision Making in the Arrow of Time

(2015) Édgar Roldán et al.   PHYSICAL REVIEW LETTERS

Flagellar Motor Switching inCaulobacter CrescentusObeys First Passage Time Statistics

(2015) Michael Morse et al.   PHYSICAL REVIEW LETTERS

Thermodynamic Uncertainty Relation for Biomolecular Processes

(2015) Andre C. Barato et al.   PHYSICAL REVIEW LETTERS

Thermodynamics of Error Correction

(2015) Pablo Sartori et al.   Physical Review X

Local detailed balance: a microscopic derivation

(2014) M Bauer et al.   Journal of Physics A-Mathematical and Theoretical

Affinity and Fluctuations in a Mesoscopic Noria

(2014) M. Bauer et al.   JOURNAL OF STATISTICAL PHYSICS

Universal features in the energetics of symmetry breaking

(2014) É. Roldán et al.   Nature Physics

Efficiency of cellular information processing

(2014) Andre C Barato et al.   NEW JOURNAL OF PHYSICS

Realization of nonequilibrium thermodynamic processes using external colored noise

(2014) Pau Mestres et al.   PHYSICAL REVIEW E

Nonequilibrium equalities in absolutely irreversible processes

(2014) Yûto Murashita et al.   PHYSICAL REVIEW E

High-Precision Test of Landauer’s Principle in a Feedback Trap

(2014) Yonggun Jun et al.   PHYSICAL REVIEW LETTERS

Transcription factors IIS and IIF enhance transcription efficiency by differentially modifying RNA polymerase pausing dynamics

(2014) Toyotaka Ishibashi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Thermodynamic Costs of Information Processing in Sensory Adaptation

(2014) Pablo Sartori et al.   PLoS Computational Biology

Statistical physics of self-replication

(2013) Jeremy L. England   JOURNAL OF CHEMICAL PHYSICS

Decisions on the fly in cellular sensory systems

(2013) E. D. Siggia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Intermittent Transcription Dynamics for the Rapid Production of Long Transcripts of High Fidelity

(2013) Martin Depken et al.   Cell Reports

Complete dissection of transcription elongation reveals slow translocation of RNA polymerase II in a linear ratchet mechanism

(2013) Manchuta Dangkulwanich et al.   eLife

Entropy production and Kullback-Leibler divergence between stationary trajectories of discrete systems

(2012) Édgar Roldán et al.   PHYSICAL REVIEW E

Stochastic thermodynamics under coarse graining

(2012) Massimiliano Esposito   PHYSICAL REVIEW E

Entropy production in full phase space for continuous stochastic dynamics

(2012) Richard E. Spinney et al.   PHYSICAL REVIEW E

Test of the Jarzynski and Crooks Fluctuation Relations in an Electronic System

(2012) O.-P. Saira et al.   PHYSICAL REVIEW LETTERS

Nascent RNA structure modulates the transcriptional dynamics of RNA polymerases

(2012) B. Zamft et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Trigger loop dynamics mediate the balance between the transcriptional fidelity and speed of RNA polymerase II

(2012) M. H. Larson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stochastic thermodynamics, fluctuation theorems and molecular machines

(2012) Udo Seifert   REPORTS ON PROGRESS IN PHYSICS

Fluctuations and response in a non-equilibrium micron-sized system

(2011) Juan Ruben Gomez-Solano et al.   JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT

Two Refreshing Views of Fluctuation Theorems Through Kinematics Elements and Exponential Martingale

(2011) Raphaël Chetrite et al.   JOURNAL OF STATISTICAL PHYSICS

Thermodynamic efficiency and mechanochemical coupling of F1-ATPase

(2011) S. Toyabe et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Equalities and Inequalities: Irreversibility and the Second Law of Thermodynamics at the Nanoscale

(2011) Christopher Jarzynski   Annual Review of Condensed Matter Physics

Steady-state fluctuation relations for systems driven by an external random force

(2010) J. R. Gomez-Solano et al.   EPL

Symmetries of generating functionals of Langevin processes with colored multiplicative noise

(2010) Camille Aron et al.   JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT

Implementation of Dynamic Bayesian Decision Making by Intracellular Kinetics

(2010) Tetsuya J. Kobayashi   PHYSICAL REVIEW LETTERS

Fluctuation Theorem Applied toF1-ATPase

(2010) Kumiko Hayashi et al.   PHYSICAL REVIEW LETTERS

The Origin of Short Transcriptional Pauses

(2009) Martin Depken et al.   BIOPHYSICAL JOURNAL

Entropy production theorems and some consequences

(2009) Arnab Saha et al.   PHYSICAL REVIEW E

Experimental Verification of a Modified Fluctuation-Dissipation Relation for a Micron-Sized Particle in a Nonequilibrium Steady State

(2009) J. R. Gomez-Solano et al.   PHYSICAL REVIEW LETTERS

Artificial Brownian motors: Controlling transport on the nanoscale

(2009) Peter Hänggi et al.   REVIEWS OF MODERN PHYSICS

Fluctuation Relations for Diffusion Processes

(2008) Raphaël Chetrite et al.   COMMUNICATIONS IN MATHEMATICAL PHYSICS

Decay times in turnover statistics of single enzymes

(2008) Martin Lindén   PHYSICAL REVIEW E

Waiting Cycle Times and Generalized Haldane Equality in the Steady-State Cycle Kinetics of Single Enzymes

(2007) Hao Ge   JOURNAL OF PHYSICAL CHEMISTRY B