Genetic relatedness analysis reveals the cotransmission of genetically related Plasmodium falciparum parasites in Thiès, Senegal

Variation in infection length and superinfection enhance selection efficiency in the human malaria parasite

(2016) Hsiao-Han Chang et al.   Scientific Reports

Dissecting the determinants of malaria chronicity: why within-host models struggle to reproduce infection dynamics

(2015) L. M. Childs et al.   Journal of the Royal Society Interface

COIL: a methodology for evaluating malarial complexity of infection using likelihood from single nucleotide polymorphism data

(2015) Kevin Galinsky et al.   MALARIA JOURNAL

Plasmodium falciparum genetic crosses in a humanized mouse model

(2015) Ashley M Vaughan et al.   NATURE METHODS

Modeling malaria genomics reveals transmission decline and rebound in Senegal

(2015) Rachel F. Daniels et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Single-cell genomics for dissection of complex malaria infections

(2014) S. Nair et al.   GENOME RESEARCH

Clonal Outbreak ofPlasmodium falciparumInfection in Eastern Panama

(2014) Nicanor Obaldia et al.   JOURNAL OF INFECTIOUS DISEASES

Multiple infections and the evolution of virulence

(2013) Samuel Alizon et al.   ECOLOGY LETTERS

Multiple infections, kin selection and the evolutionary epidemiology of parasite traits

(2013) S. Lion   JOURNAL OF EVOLUTIONARY BIOLOGY

Genetic Surveillance Detects Both Clonal and Epidemic Transmission of Malaria following Enhanced Intervention in Senegal

(2013) Rachel Daniels et al.   PLoS One

Genomic Sequencing of Plasmodium falciparum Malaria Parasites from Senegal Reveals the Demographic History of the Population

(2012) Hsiao-Han Chang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Population genetic correlates of declining transmission in a human pathogen

(2012) Standwell C. Nkhoma et al.   MOLECULAR ECOLOGY

Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing

(2012) Magnus Manske et al.   NATURE

Close kinship within multiple-genotype malaria parasite infections

(2012) S. C. Nkhoma et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Superinfection and the evolution of resistance to antimalarial drugs

(2012) E. Y. Klein et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Hitting Hotspots: Spatial Targeting of Malaria for Control and Elimination

(2012) Teun Bousema et al.   PLOS MEDICINE

Ross, Macdonald, and a Theory for the Dynamics and Control of Mosquito-Transmitted Pathogens

(2012) David L. Smith et al.   PLoS Pathogens

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Haplotype phasing: existing methods and new developments

(2011) Sharon R. Browning et al.   NATURE REVIEWS GENETICS

Plasmodium falciparum and Plasmodium vivax Infections in the Peruvian Amazon: Propagation of Complex, Multiple Allele-Type Infections without Super-Infection

(2009) Patrick L. Sutton et al.   AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

A general SNP-based molecular barcode for Plasmodium falciparum identification and tracking

(2008) Rachel Daniels et al.   MALARIA JOURNAL

PlasmoDB: a functional genomic database for malaria parasites

(2008) C. Aurrecoechea et al.   NUCLEIC ACIDS RESEARCH