Exploring the binding sites and proton diffusion on insulin amyloid fibril surfaces by naphthol-based photoacid fluorescence and molecular simulations

Proton Transfer and Structure-Specific Fluorescence in Hydrogen Bond-Rich Protein Structures

(2016) Dorothea Pinotsi et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Towards Ratiometric Sensing of Amyloid Fibrils In Vitro

(2015) Sonia Freire et al.   CHEMISTRY-A EUROPEAN JOURNAL

Excited-State Proton Transfer of Weak Photoacids Adsorbed on Biomaterials: Proton Transfer to Glucosamine of Chitosan

(2015) Ron Simkovitch et al.   JOURNAL OF PHYSICAL CHEMISTRY A

Excited-State Proton Transfer of Weak Photoacids Adsorbed on Biomaterials: 8-Hydroxy-1,3,6-pyrenetrisulfonate on Chitin and Cellulose

(2015) Ron Simkovitch et al.   JOURNAL OF PHYSICAL CHEMISTRY A

Photoacids as a new fluorescence tool for tracking structural transitions of proteins: following the concentration-induced transition of bovine serum albumin

(2015) Nadav Amdursky   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Excited-State Proton Transfer of Photoacids Adsorbed on Biomaterials

(2014) Nadav Amdursky et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Solvent dependence of excited-state proton transfer from pyranine-derived photoacids

(2014) Christian Spies et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

"Janus" Cyclic Peptides: A New Approach to Amyloid Fibril Inhibition?

(2013) Nevena Todorova et al.   PLoS One

Molecular Rotors: What Lies Behind the High Sensitivity of the Thioflavin-T Fluorescent Marker

(2012) Nadav Amdursky et al.   ACCOUNTS OF CHEMICAL RESEARCH

Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone ϕ, ψ and Side-Chain χ1 and χ2 Dihedral Angles

(2012) Robert B. Best et al.   Journal of Chemical Theory and Computation

Extension of the CHARMM general force field to sulfonyl-containing compounds and its utility in biomolecular simulations

(2012) Wenbo Yu et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

A Cyclic Peptide Inhibitor of ApoC-II Peptide Fibril Formation: Mechanistic Insight from NMR and Molecular Dynamics Analysis

(2012) Michael D.W. Griffin et al.   JOURNAL OF MOLECULAR BIOLOGY

Auramine-O as a Fluorescence Marker for the Detection of Amyloid Fibrils

(2012) Nadav Amdursky et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Mechanism of amyloidogenesis: nucleation-dependent fibrillation versus double-concerted fibrillation

(2011) Ghi-Bom Bhak et al.   BMB Reports

Small Molecule Fluorescent Probes for the Detection of Amyloid Self-Assembly In Vitro and In Vivo

(2011) Carlos W. Bertoncini et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

Proton-Transfer Reaction Dynamics within the Human Serum Albumin Protein

(2011) Boiko Cohen et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Structure-based design of non-natural amino-acid inhibitors of amyloid fibril formation

(2011) Stuart A. Sievers et al.   NATURE

A Structural Model for Apolipoprotein C-II Amyloid Fibrils: Experimental Characterization and Molecular Dynamics Simulations

(2010) Chai Lean Teoh et al.   JOURNAL OF MOLECULAR BIOLOGY

Molecular basis for insulin fibril assembly

(2009) Magdalena I. Ivanova et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Photoacid−Base Reaction in Ice via a Mobile L-Defect

(2008) Anna Uritski et al.   JOURNAL OF PHYSICAL CHEMISTRY A

Systematic Comparison of Empirical Forcefields for Molecular Dynamic Simulation of Insulin

(2008) Nevena Todorova et al.   JOURNAL OF PHYSICAL CHEMISTRY B