Identification of sRNA mediated responses to nutrient depletion in Burkholderia pseudomallei

A computational strategy for the search of regulatory small RNAs inActinobacillus pleuropneumoniae

(2016) Ciro C. Rossi et al.   RNA

Differential expression of small RNAs from Burkholderia thailandensis in response to varying environmental and stress conditions

(2014) Chris J Stubben et al.   BMC GENOMICS

Expression of antisense small RNAs in response to stress in Pseudomonas aeruginosa

(2014) María Gómez-Lozano et al.   BMC GENOMICS

CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains

(2014) Patrick R. Wright et al.   NUCLEIC ACIDS RESEARCH

Small RNA functions in carbon metabolism and virulence of enteric pathogens

(2014) Kai Papenfort et al.   Frontiers in Cellular and Infection Microbiology

Infernal 1.1: 100-fold faster RNA homology searches

(2013) E. P. Nawrocki et al.   BIOINFORMATICS

Most RNAs regulating ribosomal protein biosynthesis in Escherichia coli are narrowly distributed to Gammaproteobacteria

(2013) Yang Fu et al.   NUCLEIC ACIDS RESEARCH

Consistent Errors in First Strand cDNA Due to Random Hexamer Mispriming

(2013) Thomas P. van Gurp et al.   PLoS One

The Condition-Dependent Transcriptional Landscape of Burkholderia pseudomallei

(2013) Wen Fong Ooi et al.   PLoS Genetics

BEDOPS: high-performance genomic feature operations

(2012) Shane Neph et al.   BIOINFORMATICS

Quorum-sensing non-coding small RNAs use unique pairing regions to differentially control mRNA targets

(2012) Yi Shao et al.   MOLECULAR MICROBIOLOGY

Evolution of Burkholderia pseudomallei in Recurrent Melioidosis

(2012) Hillary S. Hayden et al.   PLoS One

Hfq and Hfq-dependent small RNAs are major contributors to multicellular development inSalmonella entericaserovar Typhimurium

(2012) Claudia Monteiro et al.   RNA Biology

Detection of small RNAs in Bordetella pertussis and identification of a novel repeated genetic element

(2011) David Hot et al.   BMC GENOMICS

Survival of Burkholderia pseudomallei in distilled water for 16 years

(2011) Apinya Pumpuang et al.   TRANSACTIONS OF THE ROYAL SOCIETY OF TROPICAL MEDICINE AND HYGIENE

The Survival of Burkholderia pseudomallei in Liquid Media

(2010) Jeannie Robertson et al.   AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE

Bacterial Antisense RNAs: How Many Are There, and What Are They Doing?

(2010) Maureen Kiley Thomason et al.   Annual Review of Genetics

Mechanism of Positive Regulation by DsrA and RprA Small Noncoding RNAs: Pairing Increases Translation and Protects rpoS mRNA from Degradation

(2010) C. A. McCullen et al.   JOURNAL OF BACTERIOLOGY

Lung transplantation for patients with cystic fibrosis and Burkholderia cepacia complex infection: A single-center experience

(2010) Anthony De Soyza et al.   JOURNAL OF HEART AND LUNG TRANSPLANTATION

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

sRNAscanner: A Computational Tool for Intergenic Small RNA Detection in Bacterial Genomes

(2010) Jayavel Sridhar et al.   PLoS One

Bacterial Small RNA Regulators: Versatile Roles and Rapidly Evolving Variations

(2010) S. Gottesman et al.   Cold Spring Harbor Perspectives in Biology

Within-Host Evolution of Burkholderia pseudomallei in Four Cases of Acute Melioidosis

(2010) Erin P. Price et al.   PLoS Pathogens

Identification of candidate structured RNAs in the marine organism 'Candidatus Pelagibacter ubique'

(2009) Michelle M Meyer et al.   BMC GENOMICS

RNAalifold: improved consensus structure prediction for RNA alignments

(2008) Stephan H Bernhart et al.   BMC BIOINFORMATICS

R-Coffee: a web server for accurately aligning noncoding RNA sequences

(2008) S. Moretti et al.   NUCLEIC ACIDS RESEARCH

High-Throughput, Kingdom-Wide Prediction and Annotation of Bacterial Non-Coding RNAs

(2008) Jonathan Livny et al.   PLoS One

A new regulatory circuit in ribosomal protein operons: S2-mediated control of the rpsB-tsf expression in vivo

(2008) L. V. Aseev et al.   RNA