Epigenetics and adaptive phenotypic variation between habitats in an asexual snail

Transgenerational transmission of environmental information in C. elegans

(2017) Adam Klosin et al.   SCIENCE

Differential DNA methylation analysis optimally requires purified cell populations

(2016) Michael K. Skinner   FERTILITY AND STERILITY

Genetic and epigenetic differences associated with environmental gradients in replicate populations of two salt marsh perennials

(2016) C. M. Foust et al.   MOLECULAR ECOLOGY

Resource base influences genome-wide DNA methylation levels in wild baboons (Papio cynocephalus)

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Comparative spatial genetics and epigenetics of plant populations: heuristic value and a proof of concept

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Epigenetics in ecology and evolution: what we know and what we need to know

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Environmental Epigenetics and a Unified Theory of the Molecular Aspects of Evolution: A Neo-Lamarckian Concept that Facilitates Neo-Darwinian Evolution

(2015) M. K. Skinner   Genome Biology and Evolution

Genome-wide signature of local adaptation linked to variable CpG methylation in oak populations

(2015) Alexander Platt et al.   MOLECULAR ECOLOGY

Epigenetic mutations can both help and hinder adaptive evolution

(2015) Ilkka Kronholm et al.   MOLECULAR ECOLOGY

MSAP markers and global cytosine methylation in plants: a literature survey and comparative analysis for a wild-growing species

(2015) Conchita Alonso et al.   Molecular Ecology Resources

The extended evolutionary synthesis: its structure, assumptions and predictions

(2015) Kevin N. Laland et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Parallel variation among populations in the shell morphology between sympatric native and invasive aquatic snails

(2014) Erica J. Kistner et al.   BIOLOGICAL INVASIONS

Does evolutionary theory need a rethink?

(2014) Kevin Laland et al.   NATURE

Epigenetic Inheritance, Epimutation, and the Response to Selection

(2014) Robert E. Furrow   PLoS One

Mapping the Epigenetic Basis of Complex Traits

(2014) S. Cortijo et al.   SCIENCE

How epigenetic mutations can affect genetic evolution: Model and mechanism

(2013) Filippos D. Klironomos et al.   BIOESSAYS

MEDIPS: genome-wide differential coverage analysis of sequencing data derived from DNA enrichment experiments

(2013) Matthias Lienhard et al.   BIOINFORMATICS

EPIGENETIC VARIATION IN ASEXUALLY REPRODUCING ORGANISMS

(2013) Koen J.F. Verhoeven et al.   EVOLUTION

Large-scale gene function analysis with the PANTHER classification system

(2013) Huaiyu Mi et al.   Nature Protocols

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Epigenetic Differentiation Persists after Male Gametogenesis in Natural Populations of the Perennial Herb Helleborus foetidus (Ranunculaceae)

(2013) Carlos M. Herrera et al.   PLoS One

Environmentally Induced Transgenerational Epigenetic Reprogramming of Primordial Germ Cells and the Subsequent Germ Line

(2013) Michael K. Skinner et al.   PLoS One

Adaptive responses and invasion: the role of plasticity and evolution in snail shell morphology

(2013) Erica J. Kistner et al.   Ecology and Evolution

Invasion of diverse habitats by few Japanese knotweed genotypes is correlated with epigenetic differentiation

(2012) Christina L. Richards et al.   ECOLOGY LETTERS

Characterization of transcriptomes from sexual and asexual lineages of a New Zealand snail (Potamopyrgus antipodarum)

(2012) Peter R. Wilton et al.   Molecular Ecology Resources

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Epigenetic transgenerational inheritance of somatic transcriptomes and epigenetic control regions

(2012) Michael K Skinner et al.   GENOME BIOLOGY

Is There a Relationship between DNA Methylation and Phenotypic Plasticity in Invertebrates?

(2012) Steven B. Roberts et al.   Frontiers in Physiology

Role of epigenetics in developmental biology and transgenerational inheritance

(2011) Michael K. Skinner   BIRTH DEFECTS RESEARCH PART C-EMBRYO TODAY-REVIEWS

DNA methylation: A source of random variation in natural populations

(2011) Rachel Massicotte et al.   Epigenetics

The absence of genotypic diversity in a successful parthenogenetic invader

(2010) Mark F. Dybdahl et al.   BIOLOGICAL INVASIONS

Environmentally induced phenotypes and DNA methylation: how to deal with unpredictable conditions until the next generation and after

(2010) BERNARD ANGERS et al.   MOLECULAR ECOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Assessing the Impact of Transgenerational Epigenetic Variation on Complex Traits

(2009) Frank Johannes et al.   PLoS Genetics