RNA-Seq using bulked recombinant inbred line populations uncovers the importance of brassinosteroid for seed longevity after priming treatments

α-Xylosidase plays essential roles in xyloglucan remodelling, maintenance of cell wall integrity, and seed germination inArabidopsis thaliana

(2016) Takuma Shigeyama et al.   JOURNAL OF EXPERIMENTAL BOTANY

Accumulation of long-lived mRNAs associated with germination in embryos during seed development of rice

(2015) Naoto Sano et al.   JOURNAL OF EXPERIMENTAL BOTANY

The importance of safeguarding genome integrity in germination and seed longevity

(2015) Wanda M. Waterworth et al.   JOURNAL OF EXPERIMENTAL BOTANY

Staying Alive: Molecular Aspects of Seed Longevity

(2015) Naoto Sano et al.   PLANT AND CELL PHYSIOLOGY

Seed priming: state of the art and new perspectives

(2015) S. Paparella et al.   PLANT CELL REPORTS

BIIDXI, the At4g32460 DUF642 gene, is involved in pectin methyl esterase regulation during Arabidopsis thalianaseed germination and plant development

(2014) Esther Zúñiga-Sánchez et al.   BMC PLANT BIOLOGY

Interaction between parental environment and genotype affects plant and seed performance in Arabidopsis

(2014) Hanzi He et al.   JOURNAL OF EXPERIMENTAL BOTANY

Promotion of Testa Rupture during Garden Cress Germination Involves Seed Compartment-Specific Expression and Activity of Pectin Methylesterases

(2014) Claudia Scheler et al.   PLANT PHYSIOLOGY

AtEXP2 Is Involved in Seed Germination and Abiotic Stress Response in Arabidopsis

(2014) An Yan et al.   PLoS One

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

TCC: an R package for comparing tag count data with robust normalization strategies

(2013) Jianqiang Sun et al.   BMC BIOINFORMATICS

The Regulation of Brassinosteroid Biosynthesis in Arabidopsis

(2013) Yuhee Chung et al.   CRITICAL REVIEWS IN PLANT SCIENCES

Large-scale gene function analysis with the PANTHER classification system

(2013) Huaiyu Mi et al.   Nature Protocols

PROTEIN L-ISOASPARTYL METHYLTRANSFERASE2 Is Differentially Expressed in Chickpea and Enhances Seed Vigor and Longevity by Reducing Abnormal Isoaspartyl Accumulation Predominantly in Seed Nuclear Proteins

(2013) P. Verma et al.   PLANT PHYSIOLOGY

Plant Cell Wall Homeostasis Is Mediated by Brassinosteroid Feedback Signaling

(2012) Sebastian Wolf et al.   CURRENT BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Proteomic Analysis of Embryonic Proteins Synthesized from Long-Lived mRNAs During Germination of Rice Seeds

(2012) Naoto Sano et al.   PLANT AND CELL PHYSIOLOGY

Natural Variation for Seed Longevity and Seed Dormancy Are Negatively Correlated in Arabidopsis

(2012) T.-P. Nguyen et al.   PLANT PHYSIOLOGY

DNA fingerprinting and new tools for fine-scale discrimination of Arabidopsis thaliana accessions

(2011) Matthieu Simon et al.   PLANT JOURNAL

From QTL to candidate gene: Genetical genomics of simple and complex traits in potato using a pooling strategy

(2010) Bjorn Kloosterman et al.   BMC GENOMICS

Integration of Brassinosteroid Signal Transduction with the Transcription Network for Plant Growth Regulation in Arabidopsis

(2010) Yu Sun et al.   DEVELOPMENTAL CELL

Combining QTL mapping and transcriptome profiling of bulked RILs for identification of functional polymorphism for salt tolerance genes in rice (Oryza sativa L.)

(2010) Awadhesh Pandit et al.   MOLECULAR GENETICS AND GENOMICS

Stored and neosynthesized mRNA in Arabidopsis seeds: effects of cycloheximide and controlled deterioration treatment on the resumption of transcription during imbibition

(2010) Mitsuhiro Kimura et al.   PLANT MOLECULAR BIOLOGY

QTL Mapping in New Arabidopsis thaliana Advanced Intercross-Recombinant Inbred Lines

(2009) Sureshkumar Balasubramanian et al.   PLoS One

The 1001 Genomes Project for Arabidopsis thaliana

(2009) Detlef Weigel et al.   GENOME BIOLOGY

Seed longevity: Survival and maintenance of high germination ability of dry seeds

(2008) Loïc Rajjou et al.   COMPTES RENDUS BIOLOGIES

Proteome-Wide Characterization of Seed Aging in Arabidopsis: A Comparison between Artificial and Natural Aging Protocols

(2008) L. Rajjou et al.   PLANT PHYSIOLOGY