Porcine familial adenomatous polyposis model enables systematic analysis of early events in adenoma progression

CHST11/13 Regulate the Metastasis and Chemosensitivity of Human Hepatocellular Carcinoma Cells Via Mitogen-Activated Protein Kinase Pathway

(2016) Huimin Zhou et al.   DIGESTIVE DISEASES AND SCIENCES

Defining the optimal animal model for translational research using gene set enrichment analysis

(2016) Christopher Weidner et al.   EMBO Molecular Medicine

Subclonal diversity arises early even in small colorectal tumours and contributes to differential growth fates

(2016) Chelsie K Sievers et al.   GUT

Enhanced expression of semaphorin 3E is involved in the gastric cancer development

(2016) Ryuhei Maejima et al.   INTERNATIONAL JOURNAL OF ONCOLOGY

A recellularized human colon model identifies cancer driver genes

(2016) Huanhuan Joyce Chen et al.   NATURE BIOTECHNOLOGY

Pigs as models of human cancers

(2016) Tatiana Flisikowska et al.   THERIOGENOLOGY

Suppressing TGF  Signaling in Regenerating Epithelia in an Inflammatory Microenvironment Is Sufficient to Cause Invasive Intestinal Cancer

(2015) H. Oshima et al.   CANCER RESEARCH

Stromal gene expression defines poor-prognosis subtypes in colorectal cancer

(2015) Alexandre Calon et al.   NATURE GENETICS

Stromal contribution to the colorectal cancer transcriptome

(2015) Claudio Isella et al.   NATURE GENETICS

The Molecular Signatures Database Hallmark Gene Set Collection

(2015) Arthur Liberzon et al.   Cell Systems

Ahnak functions as a tumor suppressor via modulation of TGFβ/Smad signaling pathway

(2014) I H Lee et al.   ONCOGENE

Distinct Molecular Features of Different Macroscopic Subtypes of Colorectal Neoplasms

(2014) Kenichi Konda et al.   PLoS One

Colorectal polyps and polyposis syndromes

(2014) N. Shussman et al.   Gastroenterology Report

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Large-scale gene function analysis with the PANTHER classification system

(2013) Huaiyu Mi et al.   Nature Protocols

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

GBP-1 acts as a tumor suppressor in colorectal cancer cells

(2012) Nathalie Britzen-Laurent et al.   CARCINOGENESIS

A Porcine Model of Familial Adenomatous Polyposis

(2012) Tatiana Flisikowska et al.   GASTROENTEROLOGY

Comprehensive molecular characterization of human colon and rectal cancer

(2012)   NATURE

Clinical Impact of Different Classes of Infiltrating T Cytotoxic and Helper Cells (Th1, Th2, Treg, Th17) in Patients with Colorectal Cancer

(2011) Marie Tosolini et al.   CANCER RESEARCH

The NumPy Array: A Structure for Efficient Numerical Computation

(2011) Stéfan van der Walt et al.   COMPUTING IN SCIENCE & ENGINEERING

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Sema3E/Plexin-D1 Mediated Epithelial-to-Mesenchymal Transition in Ovarian Endometrioid Cancer

(2011) Chun-Hsien Tseng et al.   PLoS One

The American Joint Committee on Cancer: the 7th Edition of the AJCC Cancer Staging Manual and the Future of TNM

(2010) Stephen B. Edge et al.   ANNALS OF SURGICAL ONCOLOGY

Inflammation and Colon Cancer

(2010) Janoš Terzić et al.   GASTROENTEROLOGY

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Sema3E–Plexin D1 signaling drives human cancer cell invasiveness and metastatic spreading in mice

(2010) Andrea Casazza et al.   JOURNAL OF CLINICAL INVESTIGATION

Plexin D1 is ubiquitously expressed on tumor vessels and tumor cells in solid malignancies

(2009) Ilse Roodink et al.   BMC CANCER

Allelic Imbalance at rs6983267 Suggests Selection of the Risk Allele in Somatic Colorectal Tumor Evolution

(2008) S. Tuupanen et al.   CANCER RESEARCH