RNA-DamID reveals cell-type-specific binding of roX RNAs at chromatin-entry sites

Rapid evolutionary turnover underlies conserved lncRNA–genome interactions

(2016) Jeffrey J. Quinn et al.   GENES & DEVELOPMENT

PionX sites mark the X chromosome for dosage compensation

(2016) Raffaella Villa et al.   NATURE

Cell-type-specific profiling of protein–DNA interactions without cell isolation using targeted DamID with next-generation sequencing

(2016) Owen J Marshall et al.   Nature Protocols

damidseq_pipeline: an automated pipeline for processing DamID sequencing datasets: Fig. 1.

(2015) Owen J. Marshall et al.   BIOINFORMATICS

The MSL complex: juggling RNA–protein interactions for dosage compensation and beyond

(2015) Claudia Isabelle Keller et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

High-Affinity Sites Form an Interaction Network to Facilitate Spreading of the MSL Complex across the X Chromosome in Drosophila

(2015) Fidel Ramírez et al.   MOLECULAR CELL

Comparative analysis of metazoan chromatin organization

(2014) Joshua W. K. Ho et al.   NATURE

Cell-Type-Specific Profiling of Gene Expression and Chromatin Binding without Cell Isolation: Assaying RNA Pol II Occupancy in Neural Stem Cells

(2013) Tony D. Southall et al.   DEVELOPMENTAL CELL

Tandem Stem-Loops in roX RNAs Act Together to Mediate X Chromosome Dosage Compensation in Drosophila

(2013) Ibrahim Avsar Ilik et al.   MOLECULAR CELL

Generation of a Useful roX1 Allele by Targeted Gene Conversion

(2013) Manasi S. Apte et al.   G3-Genes Genomes Genetics

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression

(2011) Kevin C. Wang et al.   NATURE

roX RNAs: Non-coding regulators of the male X chromosome in flies

(2010) Ibrahim Ilik et al.   RNA Biology

A Sequence Motif within Chromatin Entry Sites Directs MSL Establishment on the Drosophila X Chromosome

(2008) Artyom A. Alekseyenko et al.   CELL

Exploiting position effects and the gypsy retrovirus insulator to engineer precisely expressed transgenes

(2008) Michele Markstein et al.   NATURE GENETICS

The Chromosomal High-Affinity Binding Sites for the Drosophila Dosage Compensation Complex

(2008) Tobias Straub et al.   PLoS Genetics