A systematic study of normalization methods for Infinium 450K methylation data using whole-genome bisulfite sequencing data
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Title
A systematic study of normalization methods for Infinium 450K methylation data using whole-genome bisulfite sequencing data
Authors
Keywords
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Journal
Epigenetics
Volume 10, Issue 7, Pages 662-669
Publisher
Informa UK Limited
Online
2015-06-03
DOI
10.1080/15592294.2015.1057384
References
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Related references
Note: Only part of the references are listed.- Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays
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- A comprehensive overview of Infinium HumanMethylation450 data processing
- (2013) S. Dedeurwaerder et al. BRIEFINGS IN BIOINFORMATICS
- Considerations for normalization of DNA methylation data by Illumina 450K BeadChip assay in population studies
- (2013) Paul Yousefi et al. Epigenetics
- An evaluation of analysis pipelines for DNA methylation profiling using the Illumina HumanMethylation450 BeadChip platform
- (2013) Francesco Marabita et al. Epigenetics
- A systematic assessment of normalization approaches for the Infinium 450K methylation platform
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- A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data
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- Complete pipeline for Infinium® Human Methylation 450K BeadChip data processing using subset quantile normalization for accurate DNA methylation estimation
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- (2012) Jordana T. Bell et al. PLoS Genetics
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- Epigenetics of asthma
- (2011) Andrew L. Durham et al. BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS
- Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
- (2011) Felix Krueger et al. BIOINFORMATICS
- High density DNA methylation array with single CpG site resolution
- (2011) Marina Bibikova et al. GENOMICS
- Evaluation of the Infinium Methylation 450K technology
- (2011) Sarah Dedeurwaerder et al. Epigenomics
- Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications
- (2010) R Alan Harris et al. NATURE BIOTECHNOLOGY
- High-throughput bisulfite sequencing in mammalian genomes
- (2009) Zachary D. Smith et al. METHODS
- The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores
- (2009) Rafael A Irizarry et al. NATURE GENETICS
- lumi: a pipeline for processing Illumina microarray
- (2008) P. Du et al. BIOINFORMATICS
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