Long-term nickel exposure altered the bacterial community composition but not diversity in two contrasting agricultural soils

Loss of microbial diversity in soils is coincident with reductions in some specialized functions

(2014) Brajesh K. Singh et al.   ENVIRONMENTAL MICROBIOLOGY

Biodiversity acts as insurance of productivity of bacterial communities under abiotic perturbations

(2014) Ashutosh Awasthi et al.   ISME Journal

Frontiers in the microbial processes of ammonia oxidation in soils and sediments

(2014) Ju-Pei Shen et al.   JOURNAL OF SOILS AND SEDIMENTS

Initial Copper Stress Strengthens the Resistance of Soil Microorganisms to a Subsequent Copper Stress

(2014) Jing Li et al.   MICROBIAL ECOLOGY

pH-dependent distribution of soil ammonia oxidizers across a large geographical scale as revealed by high-throughput pyrosequencing

(2013) Hang-Wei Hu et al.   JOURNAL OF SOILS AND SEDIMENTS

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Reconstructing the Microbial Diversity and Function of Pre-Agricultural Tallgrass Prairie Soils in the United States

(2013) N. Fierer et al.   SCIENCE

Microbial modulators of soil carbon storage: integrating genomic and metabolic knowledge for global prediction

(2013) Pankaj Trivedi et al.   TRENDS IN MICROBIOLOGY

Selection for Cu-Tolerant Bacterial Communities with Altered Composition, but Unaltered Richness, via Long-Term Cu Exposure

(2012) Jeanette Berg et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diversity of microorganisms from forest soils differently polluted with heavy metals

(2012) Marcin Chodak et al.   APPLIED SOIL ECOLOGY

Current insights into the autotrophic thaumarchaeal ammonia oxidation in acidic soils

(2012) Ji-Zheng He et al.   SOIL BIOLOGY & BIOCHEMISTRY

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Long-term impacts of zinc and copper enriched sewage sludge additions on bacterial, archaeal and fungal communities in arable and grassland soils

(2011) Catriona A. Macdonald et al.   SOIL BIOLOGY & BIOCHEMISTRY

Effects of mercury on the activity and community composition of soil ammonia oxidizers

(2010) Yu-Rong Liu et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Examining the global distribution of dominant archaeal populations in soil

(2010) Scott T Bates et al.   ISME Journal

Soil type determines the abundance and community structure of ammonia-oxidizing bacteria and archaea in flooded paddy soils

(2010) Xin Chen et al.   JOURNAL OF SOILS AND SEDIMENTS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Toxicity and accumulation of copper and nickel in maize plants cropped on calcareous and acidic field soils

(2010) X. Y. Guo et al.   PLANT AND SOIL

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Anthropogenic disturbance affects the structure of bacterial communities

(2009) Duane Ager et al.   ENVIRONMENTAL MICROBIOLOGY

Effects of Cd and Pb on soil microbial community structure and activities

(2009) Sardar Khan et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Differential copper impact on density, diversity and resistance of adapted culturable bacterial populations according to soil organic status

(2009) David P.H. Lejon et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses

(2009) Ryan T Jones et al.   ISME Journal

Linking soil bacterial diversity to ecosystem multifunctionality using backward-elimination boosted trees analysis

(2009) Ji-Zheng He et al.   JOURNAL OF SOILS AND SEDIMENTS

Initial community evenness favours functionality under selective stress

(2009) Lieven Wittebolle et al.   NATURE

A single application of Cu to field soil has long-term effects on bacterial community structure, diversity, and soil processes

(2009) Steven Alan Wakelin et al.   PEDOBIOLOGIA

Microbial composition and diversity of an upland red soil under long-term fertilization treatments as revealed by culture-dependent and culture-independent approaches

(2008) Ji-Zheng He et al.   JOURNAL OF SOILS AND SEDIMENTS

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE