Genome re-sequencing analysis uncovers pathogenecity-related genes undergoing positive selection in Magnaporthe oryzae

Activation of ethylene signaling pathways enhances disease resistance by regulating ROS and phytoalexin production in rice

(2017) Chao Yang et al.   PLANT JOURNAL

Plant pattern-recognition receptors controlling innate immunity

(2016) Lei Li et al.   Science China-Life Sciences

Innate recognition of microbial-derived signals in immunity and inflammation

(2016) Yue Zhang et al.   Science China-Life Sciences

Global Genome and Transcriptome Analyses of Magnaporthe oryzae Epidemic Isolate 98-06 Uncover Novel Effectors and Pathogenicity-Related Genes, Revealing Gene Gain and Lose Dynamics in Genome Evolution

(2015) Yanhan Dong et al.   PLoS Pathogens

Structural basis of pathogen recognition by an integrated HMA domain in a plant NLR immune receptor

(2015) A Maqbool et al.   eLife

Ecology Drives the Distribution of Specialized Tyrosine Metabolism Modules in Fungi

(2014) George H. Greene et al.   Genome Biology and Evolution

Effectors and Effector Delivery in Magnaporthe oryzae

(2014) Shijie Zhang et al.   PLoS Pathogens

Genome comparison of two Magnaporthe oryzae field isolates reveals genome variations and potential virulence effectors

(2013) Chenxi Chen et al.   BMC GENOMICS

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

MoSwi6, an APSES family transcription factor, interacts with MoMps1 and is required for hyphal and conidial morphogenesis, appressorial function and pathogenicity of Magnaporthe oryzae

(2012) ZHONGQIANG QI et al.   MOLECULAR PLANT PATHOLOGY

Arms race co-evolution ofMagnaporthe oryzae AVR-Pikand ricePikgenes driven by their physical interactions

(2012) Hiroyuki Kanzaki et al.   PLANT JOURNAL

Gene Expression Profiling during Conidiation in the Rice Blast Pathogen Magnaporthe oryzae

(2012) Kyoung Su Kim et al.   PLoS One

Comparative Analysis of the Genomes of Two Field Isolates of the Rice Blast Fungus Magnaporthe oryzae

(2012) Minfeng Xue et al.   PLoS Genetics

Genome-wide Transcriptional Profiling of Appressorium Development by the Rice Blast Fungus Magnaporthe oryzae

(2012) Darren M. Soanes et al.   PLoS Pathogens

The role of effectors of biotrophic and hemibiotrophic fungi in infection

(2011) Markus Koeck et al.   CELLULAR MICROBIOLOGY

Optimized filtering reduces the error rate in detecting genomic variants by short-read sequencing

(2011) Joke Reumers et al.   NATURE BIOTECHNOLOGY

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

Pyomelanin Formation in Aspergillus fumigatus Requires HmgX and the Transcriptional Activator HmgR but Is Dispensable for Virulence

(2011) Sophia Keller et al.   PLoS One

Multiple Translocation of the AVR-Pita Effector Gene among Chromosomes of the Rice Blast Fungus Magnaporthe oryzae and Related Species

(2011) Izumi Chuma et al.   PLoS Pathogens

The bZIP Transcription Factor MoAP1 Mediates the Oxidative Stress Response and Is Critical for Pathogenicity of the Rice Blast Fungus Magnaporthe oryzae

(2011) Min Guo et al.   PLoS Pathogens

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

(2009) K. Ye et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Recent progress in discovery and functional analysis of effector proteins of fungal and oomycete plant pathogens

(2009) Jeffrey G Ellis et al.   CURRENT OPINION IN PLANT BIOLOGY

BreakDancer: an algorithm for high-resolution mapping of genomic structural variation

(2009) Ken Chen et al.   NATURE METHODS

Under pressure: investigating the biology of plant infection by Magnaporthe oryzae

(2009) Richard A. Wilson et al.   NATURE REVIEWS MICROBIOLOGY

Association Genetics Reveals Three Novel Avirulence Genes from the Rice Blast Fungal Pathogen Magnaporthe oryzae

(2009) K. Yoshida et al.   PLANT CELL