An ultraprocessive, accurate reverse transcriptase encoded by a metazoan group II intron

Visualizing the secondary and tertiary architectural domains of lncRNA RepA

(2017) Fei Liu et al.   Nature Chemical Biology

The Coding Region of the HCV Genome Contains a Network of Regulatory RNA Structures

(2016) Nathan Pirakitikulr et al.   MOLECULAR CELL

DMS-MaPseq for genome-wide or targeted RNA structure probing in vivo

(2016) Meghan Zubradt et al.   NATURE METHODS

Structure of a group II intron in complex with its reverse transcriptase

(2016) Guosheng Qu et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Crystal structures of a group II intron maturase reveal a missing link in spliceosome evolution

(2016) Chen Zhao et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Mapping DNA polymerase errors by single-molecule sequencing

(2016) David F. Lee et al.   NUCLEIC ACIDS RESEARCH

RNA-seq of human reference RNA samples using a thermostable group II intron reverse transcriptase

(2016) Ryan M. Nottingham et al.   RNA

Structure of a group II intron in complex with its reverse transcriptase

(2016) Guosheng Qu et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Crystal structures of a group II intron maturase reveal a missing link in spliceosome evolution

(2016) Chen Zhao et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Modeling Enzyme Processivity Reveals that RNA-Seq Libraries Are Biased in Characteristic and Correctable Ways

(2016) Nathan Archer et al.   Cell Systems

CoVaMa: Co-Variation Mapper for disequilibrium analysis of mutant loci in viral populations using next-generation sequence data

(2015) Andrew Routh et al.   METHODS

Structural imprints in vivo decode RNA regulatory mechanisms

(2015) Robert C. Spitale et al.   NATURE

The I-TASSER Suite: protein structure and function prediction

(2015) Jianyi Yang et al.   NATURE METHODS

Efficient and quantitative high-throughput tRNA sequencing

(2015) Guanqun Zheng et al.   NATURE METHODS

Functionally conserved architecture of hepatitis C virus RNA genomes

(2015) David M. Mauger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-throughput sequencing of human plasma RNA by using thermostable group II intron reverse transcriptases

(2015) Yidan Qin et al.   RNA

Resolving the complexity of the human genome using single-molecule sequencing

(2014) Mark J. P. Chaisson et al.   NATURE

RNA motif discovery by SHAPE and mutational profiling (SHAPE-MaP)

(2014) Nathan A Siegfried et al.   NATURE METHODS

HIV-1 Quasispecies Delineation by Tag Linkage Deep Sequencing

(2014) Nicholas C. Wu et al.   PLoS One

Biotechnological applications of mobile group II introns and their reverse transcriptases: gene targeting, RNA-seq, and non-coding RNA analysis

(2014) Peter J Enyeart et al.   Mobile DNA

Long Noncoding RNAs: Past, Present, and Future

(2013) J. T. Y. Kung et al.   GENETICS

Thermostable group II intron reverse transcriptase fusion proteins and their use in cDNA synthesis and next-generation RNA sequencing

(2013) S. Mohr et al.   RNA

Analysis of RNA base modification and structural rearrangement by single-molecule real-time detection of reverse transcription

(2013) Igor D Vilfan et al.   JOURNAL OF NANOBIOTECHNOLOGY

A Small Post-Translocation Energy Bias Aids Nucleotide Selection in T7 RNA Polymerase Transcription

(2012) Jin Yu et al.   BIOPHYSICAL JOURNAL

Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons

(2012) Kate D. Meyer et al.   CELL

A Unified Model of Transcription Elongation: What Have We Learned from Single-Molecule Experiments?

(2011) Dáibhid Ó Maoiléidigh et al.   BIOPHYSICAL JOURNAL

Database for bacterial group II introns

(2011) M. A. Candales et al.   NUCLEIC ACIDS RESEARCH

Direct RNA sequencing

(2009) Fatih Ozsolak et al.   NATURE

Long non-coding RNAs: insights into functions

(2009) Tim R. Mercer et al.   NATURE REVIEWS GENETICS

Bioinformatic and Physical Characterizations of Genome-Scale Ordered RNA Structure in Mammalian RNA Viruses

(2008) M. Davis et al.   JOURNAL OF VIROLOGY

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

(2008) Qun Pan et al.   NATURE GENETICS

Real-Time DNA Sequencing from Single Polymerase Molecules

(2008) J. Eid et al.   SCIENCE