Expression of distinct maternal and somatic 5.8S, 18S, and 28S rRNA types during zebrafish development

Nucleolar organizer regions: genomic ‘dark matter’ requiring illumination

(2016) Brian McStay   GENES & DEVELOPMENT

Profiling of 2′-O-Me in human rRNA reveals a subset of fractionally modified positions and provides evidence for ribosome heterogeneity

(2016) Nicolai Krogh et al.   NUCLEIC ACIDS RESEARCH

The Modular Adaptive Ribosome

(2016) Anupama Yadav et al.   PLoS One

Mother-Specific Signature in the Maternal Transcriptome Composition of Mature, Unfertilized Zebrafish Eggs

(2016) Han Rauwerda et al.   PLoS One

Eukaryote-specific rRNA expansion segments function in ribosome biogenesis

(2016) Madhumitha Ramesh et al.   RNA

Linking maternal and somatic 5S rRNA types with different sequence-specific non-LTR retrotransposons

(2016) Mauro D. Locati et al.   RNA

All Ribosomes Are Created Equal. Really?

(2016) Thomas Preiss   TRENDS IN BIOCHEMICAL SCIENCES

Ribosomal 18S rRNA base pairs with mRNA during eukaryotic translation initiation

(2016) Franck Martin et al.   Nature Communications

Ribosomal small subunit domains radiate from a central core

(2016) Burak Gulen et al.   Scientific Reports

Translating the Genome in Time and Space: Specialized Ribosomes, RNA Regulons, and RNA-Binding Proteins

(2015) Zhen Shi et al.   Annual Review of Cell and Developmental Biology

The ribosome prophecy

(2015) Maria Barna   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Translation regulation by ribosomes: Increased complexity and expanded scope

(2015) Vincent P. Mauro et al.   RNA Biology

Universal and domain-specific sequences in 23S–28S ribosomal RNA identified by computational phylogenetics

(2015) Stephen M. Doris et al.   RNA

Secondary Structures of rRNAs from All Three Domains of Life

(2014) Anton S. Petrov et al.   PLoS One

An overview of pre-ribosomal RNA processing in eukaryotes

(2014) Anthony K. Henras et al.   Wiley Interdisciplinary Reviews-RNA

Structural Basis of the Translational Elongation Cycle

(2013) Rebecca M. Voorhees et al.   Annual Review of Biochemistry

Structures of the human and Drosophila 80S ribosome

(2013) Andreas M. Anger et al.   NATURE

The zebrafish reference genome sequence and its relationship to the human genome

(2013) Kerstin Howe et al.   NATURE

Secondary structure and domain architecture of the 23S and 5S rRNAs

(2013) Anton S. Petrov et al.   NUCLEIC ACIDS RESEARCH

An evolutionary conserved pattern of 18S rRNA sequence complementarity to mRNA 5′ UTRs and its implications for eukaryotic gene translation regulation

(2013) Josef Pánek et al.   NUCLEIC ACIDS RESEARCH

Functional Role of the Sarcin–Ricin Loop of the 23S rRNA in the Elongation Cycle of Protein Synthesis

(2012) Xinying Shi et al.   JOURNAL OF MOLECULAR BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Specialized ribosomes: a new frontier in gene regulation and organismal biology

(2012) Shifeng Xue et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

A mechanistic overview of translation initiation in eukaryotes

(2012) Colin Echeverría Aitken et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Broad-Specificity mRNA–rRNA Complementarity in Efficient Protein Translation

(2012) Pamela A. Barendt et al.   PLoS Genetics

Expression of Variant Ribosomal RNA Genes in Mouse Oocytes and Preimplantation Embryos1

(2011) Motomasa Ihara et al.   BIOLOGY OF REPRODUCTION

Ribosome-Mediated Specificity in Hox mRNA Translation and Vertebrate Tissue Patterning

(2011) Nadya Kondrashov et al.   CELL

Repetitive DNA and next-generation sequencing: computational challenges and solutions

(2011) Todd J. Treangen et al.   NATURE REVIEWS GENETICS

Eukaryotic 5S rRNA biogenesis

(2011) Martin Ciganda et al.   Wiley Interdisciplinary Reviews-RNA

Mutations in 23S rRNA at the Peptidyl Transferase Center and Their Relationship to Linezolid Binding and Cross-Resistance

(2010) K. S. Long et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

The role of the universally conserved A2450–C2063 base pair in the ribosomal peptidyl transferase center

(2010) Anna Chirkova et al.   NUCLEIC ACIDS RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

23S rRNA Nucleotides in the Peptidyl Transferase Center Are Essential for Tryptophanase Operon Induction

(2009) R. Yang et al.   JOURNAL OF BACTERIOLOGY

Single 23S rRNA mutations at the ribosomal peptidyl transferase centre confer resistance to valnemulin and other antibiotics inMycobacterium smegmatisby perturbation of the drug binding pocket

(2009) Katherine S. Long et al.   MOLECULAR MICROBIOLOGY

Histones: Annotating Chromatin

(2008) Eric I. Campos et al.   Annual Review of Genetics

5.8S-28S rRNA interaction and HMM-based ITS2 annotation

(2008) Alexander Keller et al.   GENE

Modulating the activity of the peptidyl transferase center of the ribosome

(2008) M. Beringer   RNA