DUSP11 – An RNA phosphatase that regulates host and viral non-coding RNAs in mammalian cells

DUSP11 activity on triphosphorylated transcripts promotes Argonaute association with noncanonical viral microRNAs and regulates steady-state levels of cellular noncoding RNAs

(2016) James M. Burke et al.   GENES & DEVELOPMENT

RNA-seq of human reference RNA samples using a thermostable group II intron reverse transcriptase

(2016) Ryan M. Nottingham et al.   RNA

Identification, validation, and characterization of noncanonical miRNAs

(2015) James M. Burke et al.   METHODS

Argonaute 2 Binds Directly to tRNA Genes and Promotes Gene Repression incis

(2015) Jessica L. Woolnough et al.   MOLECULAR AND CELLULAR BIOLOGY

High-throughput sequencing of human plasma RNA by using thermostable group II intron reverse transcriptases

(2015) Yidan Qin et al.   RNA

Infection-Induced Retrotransposon-Derived Noncoding RNAs Enhance Herpesviral Gene Expression via the NF-κB Pathway

(2015) John Karijolich et al.   PLoS Pathogens

Dual-specificity phosphatases: critical regulators with diverse cellular targets

(2015) Kate I. Patterson et al.   BIOCHEMICAL JOURNAL

Structure of Human PIR1, an Atypical Dual-Specificity Phosphatase

(2014) Rajeshwer Singh Sankhala et al.   BIOCHEMISTRY

A conserved RNA polymerase III promoter required for gammaherpesvirus TMER transcription and microRNA processing

(2014) Kevin W. Diebel et al.   GENE

Identification of Novel, Highly Expressed Retroviral MicroRNAs in Cells Infected by Bovine Foamy Virus

(2014) A. W. Whisnant et al.   JOURNAL OF VIROLOGY

Identification of tri-phosphatase activity in the biogenesis of retroviral microRNAs and RNAP III-generated shRNAs

(2014) James M. Burke et al.   NUCLEIC ACIDS RESEARCH

Broad and adaptable RNA structure recognition by the human interferon-induced tetratricopeptide repeat protein IFIT5

(2014) G. E. Katibah et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Versatile microRNA biogenesis in animals and their viruses

(2014) Mingyi Xie et al.   RNA Biology

A central role for the primary microRNA stem in guiding the position and efficiency of Drosha processing of a viral pri-miRNA

(2014) J. M. Burke et al.   RNA

Virus-Encoded MicroRNAs Facilitate Gammaherpesvirus Latency and Pathogenesis In Vivo

(2014) E. R. Feldman et al.   mBio

Noncanonical MicroRNA (miRNA) Biogenesis Gives Rise to Retroviral Mimics of Lymphoproliferative and Immunosuppressive Host miRNAs

(2014) R. P. Kincaid et al.   mBio

Distinct Antiviral Responses in Pluripotent versus Differentiated Cells

(2014) Justin M. Pare et al.   PLoS Pathogens

Mammalian 5′-Capped MicroRNA Precursors that Generate a Single MicroRNA

(2013) Mingyi Xie et al.   CELL

Beyond Secondary Structure: Primary-Sequence Determinants License Pri-miRNA Hairpins for Processing

(2013) Vincent C. Auyeung et al.   CELL

Is RNA Interference a Physiologically Relevant Innate Antiviral Immune Response in Mammals?

(2013) Bryan R. Cullen et al.   Cell Host & Microbe

The Complexity of Human Ribosome Biogenesis Revealed by Systematic Nucleolar Screening of Pre-rRNA Processing Factors

(2013) Lionel Tafforeau et al.   MOLECULAR CELL

Lower and upper stem-single-stranded RNA junctions together determine the Drosha cleavage site

(2013) H. Ma et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Thermostable group II intron reverse transcriptase fusion proteins and their use in cDNA synthesis and next-generation RNA sequencing

(2013) S. Mohr et al.   RNA

Persistently adenovirus-infected lymphoid cells express microRNAs derived from the viral VAI and especially VAII RNA

(2013) Yuki Furuse et al.   VIROLOGY

Poly(A)-Specific Ribonuclease Mediates 3′-End Trimming of Argonaute2-Cleaved Precursor MicroRNAs

(2013) Mayuko Yoda et al.   Cell Reports

Virus-Encoded microRNAs: An Overview and a Look to the Future

(2013) Rodney P. Kincaid et al.   PLoS Pathogens

DICER1 Loss and Alu RNA Induce Age-Related Macular Degeneration via the NLRP3 Inflammasome and MyD88

(2012) Valeria Tarallo et al.   CELL

DICER- and AGO3-dependent generation of retinoic acid–induced DR2 Alu RNAs regulates human stem cell proliferation

(2012) QiDong Hu et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

RNA virus microRNA that mimics a B-cell oncomiR

(2012) R. P. Kincaid et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

miRNA-Mediated Gene Silencing by Translational Repression Followed by mRNA Deadenylation and Decay

(2012) S. Djuranovic et al.   SCIENCE

Ribosome Profiling Shows That miR-430 Reduces Translation Before Causing mRNA Decay in Zebrafish

(2012) A. A. Bazzini et al.   SCIENCE

Inhibition of activated pericentromeric SINE/Alu repeat transcription in senescent human adult stem cells reinstates self-renewal

(2011) Jianrong Wang et al.   CELL CYCLE

A Primate Herpesvirus Uses the Integrator Complex to Generate Viral MicroRNAs

(2011) Demián Cazalla et al.   MOLECULAR CELL

DICER1 deficit induces Alu RNA toxicity in age-related macular degeneration

(2011) Hiroki Kaneko et al.   NATURE

Virus-encoded microRNAs

(2011) Adam Grundhoff et al.   VIROLOGY

Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP

(2010) Markus Hafner et al.   CELL

A Mammalian Herpesvirus Uses Noncanonical Expression and Processing Mechanisms to Generate Viral MicroRNAs

(2010) Hal P. Bogerd et al.   MOLECULAR CELL

Distinct Phases of siRNA Synthesis in an Endogenous RNAi Pathway in C. elegans Soma

(2010) Jonathan I. Gent et al.   MOLECULAR CELL

A dicer-independent miRNA biogenesis pathway that requires Ago catalysis

(2010) Sihem Cheloufi et al.   NATURE

The terminal loop region controls microRNA processing by Drosha and Dicer

(2010) X. Zhang et al.   NUCLEIC ACIDS RESEARCH

Sequential rounds of RNA-dependent RNA transcription drive endogenous small-RNA biogenesis in the ERGO-1/Argonaute pathway

(2010) Jessica J. Vasale et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Origins and Mechanisms of miRNAs and siRNAs

(2009) Richard W. Carthew et al.   CELL

The non-coding RNA of the multidrug resistance-linked vault particle encodes multiple regulatory small RNAs

(2009) Helena Persson et al.   NATURE CELL BIOLOGY

The 5′-end heterogeneity of adenovirus virus-associated RNAI contributes to the asymmetric guide strand incorporation into the RNA-induced silencing complex

(2009) Ning Xu et al.   NUCLEIC ACIDS RESEARCH

Mature and functional viral miRNAs transcribed from novel RNA polymerase III promoters

(2009) K. W. Diebel et al.   RNA

Isolation and characterization of DUSP11, a novel p53 target gene

(2008) Greta Caprara et al.   JOURNAL OF CELLULAR AND MOLECULAR MEDICINE