A comprehensive profile of circulating RNAs in human serum

Extracellular vesicles and blood diseases

(2017) Shosaku Nomura   INTERNATIONAL JOURNAL OF HEMATOLOGY

Knowledge about the presence or absence of miRNA isoforms (isomiRs) can successfully discriminate amongst 32 TCGA cancer types

(2017) Aristeidis G. Telonis et al.   NUCLEIC ACIDS RESEARCH

Sources to variability in circulating human miRNA signatures

(2017) Andreas Keller et al.   RNA Biology

High Throughput Sequencing of Extracellular RNA from Human Plasma

(2017) Kirsty M. Danielson et al.   PLoS One

Bias in High-Throughput Analysis of miRNAs and Implications for Biomarker Studies

(2016) Christina Backes et al.   ANALYTICAL CHEMISTRY

MINTbase: a framework for the interactive exploration of mitochondrial and nuclear tRNA fragments

(2016) Venetia Pliatsika et al.   BIOINFORMATICS

What is normal? Next generation sequencing-driven analysis of the human circulating miRNAOme

(2016) D. P. Tonge et al.   BMC MOLECULAR BIOLOGY

Plasma miR-122 and miR-200 family are prognostic markers in colorectal cancer

(2016) Melanie Maierthaler et al.   INTERNATIONAL JOURNAL OF CANCER

Circular RNAs are miRNA sponges and can be used as a new class of biomarker

(2016) Franceli Rodrigues Kulcheski et al.   JOURNAL OF BIOTECHNOLOGY

The power and promise of RNA-seq in ecology and evolution

(2016) Erica V. Todd et al.   MOLECULAR ECOLOGY

tRF2Cancer: A web server to detect tRNA-derived small RNA fragments (tRFs) and their expression in multiple cancers

(2016) Ling-Ling Zheng et al.   NUCLEIC ACIDS RESEARCH

Evaluation of microRNA alignment techniques

(2016) Mark Ziemann et al.   RNA

microRNAs as cancer biomarkers

(2016) Kjersti Flatmark et al.   SCANDINAVIAN JOURNAL OF CLINICAL & LABORATORY INVESTIGATION

Tumour-initiating cell-specific miR-1246 and miR-1290 expression converge to promote non-small cell lung cancer progression

(2016) Wen Cai Zhang et al.   Nature Communications

Diverse human extracellular RNAs are widely detected in human plasma

(2016) Jane E. Freedman et al.   Nature Communications

Plasma extracellular RNA profiles in healthy and cancer patients

(2016) Tiezheng Yuan et al.   Scientific Reports

A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome

(2015) Bastian Fromm et al.   Annual Review of Genetics

Biomarker discovery: quantification of microRNAs and other small non-coding RNAs using next generation sequencing

(2015) Juan Pablo Lopez et al.   BMC Medical Genomics

Circulating microRNAs for the prediction of metastasis in breast cancer patients diagnosed with early stage disease

(2015) Joseph Inns et al.   BREAST

microRNA Biomarker Discovery and High-Throughput DNA Sequencing Are Possible Using Long-term Archived Serum Samples

(2015) T. B. Rounge et al.   CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION

Endogenous tRNA-Derived Fragments Suppress Breast Cancer Progression via YBX1 Displacement

(2015) Hani Goodarzi et al.   CELL

Functional roles of non-coding Y RNAs

(2015) Madzia P. Kowalski et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

Serum Exosome MicroRNA as a Minimally-Invasive Early Biomarker of AML

(2015) Noah I. Hornick et al.   Scientific Reports

Non-coding RNA: what is functional and what is junk?

(2015) Alexander F. Palazzo et al.   Frontiers in Genetics

Identifying (non-)coding RNAs and small peptides: Challenges and opportunities

(2014) Andrea Pauli et al.   BIOESSAYS

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Meta-analysis of tRNA derived RNA fragments reveals that they are evolutionarily conserved and associate with AGO proteins to recognize specific RNA targets

(2014) Pankaj Kumar et al.   BMC BIOLOGY

Angiogenin-Cleaved tRNA Halves Interact with Cytochrome c, Protecting Cells from Apoptosis during Osmotic Stress

(2014) M. Saikia et al.   MOLECULAR AND CELLULAR BIOLOGY

An mRNA-Derived Noncoding RNA Targets and Regulates the Ribosome

(2014) Andreas Pircher et al.   MOLECULAR CELL

The multilayered complexity of ceRNA crosstalk and competition

(2014) Yvonne Tay et al.   NATURE

Rfam 12.0: updates to the RNA families database

(2014) Eric P. Nawrocki et al.   NUCLEIC ACIDS RESEARCH

piRBase: a web resource assisting piRNA functional study

(2014) Peng Zhang et al.   Database-The Journal of Biological Databases and Curation

Infernal 1.1: 100-fold faster RNA homology searches

(2013) E. P. Nawrocki et al.   BIOINFORMATICS

A highly expressed miR-101 isomiR is a functional silencing small RNA

(2013) Franc Llorens et al.   BMC GENOMICS

Small RNAs derived from lncRNA RNase MRP have gene-silencing activity relevant to human cartilage–hair hypoplasia

(2013) Leslie E. Rogler et al.   HUMAN MOLECULAR GENETICS

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

tRNA-derived microRNA modulates proliferation and the DNA damage response and is down-regulated in B cell lymphoma

(2013) Roy L. Maute et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A blood based 12-miRNA signature of Alzheimer disease patients

(2013) Petra Leidinger et al.   GENOME BIOLOGY

MicroRNAs in Stress Signaling and Human Disease

(2012) Joshua T. Mendell et al.   CELL

GENCODE: The reference human genome annotation for The ENCODE Project

(2012) J. Harrow et al.   GENOME RESEARCH

Landscape of transcription in human cells

(2012) Sarah Djebali et al.   NATURE

An integrated encyclopedia of DNA elements in the human genome

(2012)   NATURE

Deep sequencing of RNA from immune cell-derived vesicles uncovers the selective incorporation of small non-coding RNA biotypes with potential regulatory functions

(2012) Esther N. M. Nolte-’t Hoen et al.   NUCLEIC ACIDS RESEARCH

Comparing the MicroRNA Spectrum between Serum and Plasma

(2012) Kai Wang et al.   PLoS One

ENCODE Project Writes Eulogy for Junk DNA

(2012) E. Pennisi   SCIENCE

IsomiRs – the overlooked repertoire in the dynamic microRNAome

(2012) Corine T. Neilsen et al.   TRENDS IN GENETICS

From snoRNA to miRNA: Dual function regulatory non-coding RNAs

(2011) Michelle S. Scott et al.   BIOCHIMIE

Small RNAs derived from longer non-coding RNAs

(2011) Susanne Röther et al.   BIOCHIMIE

RNA-seq: technical variability and sampling

(2011) Lauren M McIntyre et al.   BMC GENOMICS

Recovering circulating extracellular or cell-free RNA from bodily fluids

(2011) Georgios Tzimagiorgis et al.   Cancer Epidemiology

Differential expression in RNA-seq: A matter of depth

(2011) S. Tarazona et al.   GENOME RESEARCH

Toward the blood-borne miRNome of human diseases

(2011) Andreas Keller et al.   NATURE METHODS

Argonaute2 complexes carry a population of circulating microRNAs independent of vesicles in human plasma

(2011) J. D. Arroyo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stable serum miRNA profiles as potential tool for non-invasive lung cancer diagnosis

(2011) Andreas Keller et al.   RNA Biology

RNA in pieces

(2011) Alex C. Tuck et al.   TRENDS IN GENETICS

The Reality of Pervasive Transcription

(2011) Michael B. Clark et al.   PLOS BIOLOGY

What are biomarkers?

(2010) Kyle Strimbu et al.   Current Opinion in HIV and AIDS

Stressing Out over tRNA Cleavage

(2009) Debrah M. Thompson et al.   CELL

A novel class of small RNAs: tRNA-derived RNA fragments (tRFs)

(2009) Yong Sun Lee et al.   GENES & DEVELOPMENT

The non-coding RNA of the multidrug resistance-linked vault particle encodes multiple regulatory small RNAs

(2009) Helena Persson et al.   NATURE CELL BIOLOGY

SeqBuster, a bioinformatic tool for the processing and analysis of small RNAs datasets, reveals ubiquitous miRNA modifications in human embryonic cells

(2009) Lorena Pantano et al.   NUCLEIC ACIDS RESEARCH

Characterization of microRNAs in serum: a novel class of biomarkers for diagnosis of cancer and other diseases

(2008) Xi Chen et al.   CELL RESEARCH

Data quality at the Cancer Registry of Norway: An overview of comparability, completeness, validity and timeliness

(2008) Inger Kristin Larsen et al.   EUROPEAN JOURNAL OF CANCER

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells

(2008) R. D. Morin et al.   GENOME RESEARCH

Circulating microRNAs as stable blood-based markers for cancer detection

(2008) P. S. Mitchell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA