Princeton_TIGRESS 2.0: High refinement consistency and net gains through support vector machines and molecular dynamics in double-blind predictions during the CASP11 experiment
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Title
Princeton_TIGRESS 2.0: High refinement consistency and net gains through support vector machines and molecular dynamics in double-blind predictions during the CASP11 experiment
Authors
Keywords
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Journal
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
Volume 85, Issue 6, Pages 1078-1098
Publisher
Wiley
Online
2017-02-28
DOI
10.1002/prot.25274
References
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- (2012) J. P. G. L. M. Rodrigues et al. NUCLEIC ACIDS RESEARCH
- The Protein-Folding Problem, 50 Years On
- (2012) K. A. Dill et al. SCIENCE
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- (2012) Chih-Chung Chang et al. ACM Transactions on Intelligent Systems and Technology
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- MolProbity: all-atom structure validation for macromolecular crystallography
- (2009) Vincent B. Chen et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- CHARMM: The biomolecular simulation program
- (2009) B. R. Brooks et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
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- FACTS: Fast analytical continuum treatment of solvation
- (2007) Urs Haberthür et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
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