Improved performance in CAPRI round 37 using LZerD docking and template-based modeling with combined scoring functions

Human and server docking prediction for CAPRI round 30-35 using LZerD with combined scoring functions

(2016) Lenna X. Peterson et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment

(2016) Marc F. Lensink et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Protein structure prediction using residue- and fragment-environment potentials in CASP11

(2015) Hyungrae Kim et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Structural templates for comparative protein docking

(2015) Ivan Anishchenko et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Detecting local residue environment similarity for recognizing near-native structure models

(2014) Hyungrae Kim et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Protein docking prediction using predicted protein-protein interface

(2012) Bin Li et al.   BMC BIOINFORMATICS

GOAP: A Generalized Orientation-Dependent, All-Atom Statistical Potential for Protein Structure Prediction

(2011) Hongyi Zhou et al.   BIOPHYSICAL JOURNAL

Molecular Surface Representation Using 3D Zernike Descriptors for Protein Shape Comparison and Docking

(2011) Daisuke Kihara et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

Inscuteable and NuMA proteins bind competitively to Leu-Gly-Asn repeat-enriched protein (LGN) during asymmetric cell divisions

(2011) S. Culurgioni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Statistical mechanics-based method to extract atomic distance-dependent potentials from protein structures

(2011) Sheng-You Huang et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

The APC/C subunit Cdc16/Cut9 is a contiguous tetratricopeptide repeat superhelix with a homo-dimer interface similar to Cdc27

(2010) Ziguo Zhang et al.   EMBO JOURNAL

Effect of using suboptimal alignments in template-based protein structure prediction

(2010) Hao Chen et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Protein-protein docking using region-based 3D Zernike descriptors

(2009) Vishwesh Venkatraman et al.   BMC BIOINFORMATICS

I-TASSER server for protein 3D structure prediction

(2008) Yang Zhang   BMC BIOINFORMATICS

Rapid comparison of properties on protein surface

(2008) Lee Sael et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

FACTS: Fast analytical continuum treatment of solvation

(2007) Urs Haberthür et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction

(2002) Hongyi Zhou et al.   PROTEIN SCIENCE