Systematic evaluation of CS-Rosetta for membrane protein structure prediction with sparse NOE restraints

A topological and conformational stability alphabet for multipass membrane proteins

(2016) Xiang Feng et al.   Nature Chemical Biology

Structure prediction using sparse simulated NOE restraints with Rosetta in CASP11

(2016) Sergey Ovchinnikov et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Computation and Functional Studies Provide a Model for the Structure of the Zinc Transporter hZIP4

(2015) Sagar Antala et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

BCL::MP-fold: Membrane protein structure prediction guided by EPR restraints

(2015) Axel W. Fischer et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Structure and activity of tryptophan-rich TSPO proteins

(2015) Y. Guo et al.   SCIENCE

An Integrated Framework Advancing Membrane Protein Modeling and Design

(2015) Rebecca F. Alford et al.   PLoS Computational Biology

Large-scale determination of previously unsolved protein structures using evolutionary information

(2015) Sergey Ovchinnikov et al.   eLife

Automatic NOESY assignment in CS-RASREC-Rosetta

(2014) Oliver F. Lange   JOURNAL OF BIOMOLECULAR NMR

Computational modeling of membrane proteins

(2014) Julia Koehler Leman et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Clustering by fast search and find of density peaks

(2014) A. Rodriguez et al.   SCIENCE

High-Resolution Modeling of Transmembrane Helical Protein Structures from Distant Homologues

(2014) Kuang-Yui M. Chen et al.   PLoS Computational Biology

Improving 3D structure prediction from chemical shift data

(2013) Gijs van der Schot et al.   JOURNAL OF BIOMOLECULAR NMR

Improved chemical shift based fragment selection for CS-Rosetta using Rosetta3 fragment picker

(2013) Robert Vernon et al.   JOURNAL OF BIOMOLECULAR NMR

Crystal structure of microsomal prostaglandin E2 synthase provides insight into diversity in the MAPEG superfamily

(2013) T. Sjogren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

BCL::Fold-Protein topology determination from limited NMR restraints

(2013) Brian E. Weiner et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

BCL::MP-Fold: Folding Membrane Proteins through Assembly of Transmembrane Helices

(2013) Brian E. Weiner et al.   STRUCTURE

Three-Dimensional Structures of Membrane Proteins from Genomic Sequencing

(2012) Thomas A. Hopf et al.   CELL

Protein structure prediction from sequence variation

(2012) Debora S Marks et al.   NATURE BIOTECHNOLOGY

Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples

(2012) O. F. Lange et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Overcoming barriers to membrane protein structure determination

(2011) Roslyn M Bill et al.   NATURE BIOTECHNOLOGY

Direct-coupling analysis of residue coevolution captures native contacts across many protein families

(2011) F. Morcos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Amphipols, Nanodiscs, and Fluorinated Surfactants: Three Nonconventional Approaches to Studying Membrane Proteins in Aqueous Solutions

(2010) Jean-Luc Popot   Annual Review of Biochemistry

SPARTA+: a modest improvement in empirical NMR chemical shift prediction by means of an artificial neural network

(2010) Yang Shen et al.   JOURNAL OF BIOMOLECULAR NMR

Algorithm for selection of optimized EPR distance restraints for de novo protein structure determination

(2010) Kelli Kazmier et al.   JOURNAL OF STRUCTURAL BIOLOGY

Structure determination of the seven-helix transmembrane receptor sensory rhodopsin II by solution NMR spectroscopy

(2010) Antoine Gautier et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

De novo structure generation using chemical shifts for proteins with high-sequence identity but different folds

(2010) Yang Shen et al.   PROTEIN SCIENCE

Prediction of the human membrane proteome

(2010) Linn Fagerberg et al.   PROTEOMICS

NMR Structure Determination for Larger Proteins Using Backbone-Only Data

(2010) S. Raman et al.   SCIENCE

Dynamic nature of disulphide bond formation catalysts revealed by crystal structures of DsbB

(2009) Kenji Inaba et al.   EMBO JOURNAL

Prediction of membrane protein structures with complex topologies using limited constraints

(2009) P. Barth et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative analysis of NMR chemical shift predictions for proteins in the solid phase

(2009) Karsten Seidel et al.   SOLID STATE NUCLEAR MAGNETIC RESONANCE

OCTOPUS: improving topology prediction by two-track ANN-based preference scores and an extended topological grammar

(2008) Håkan Viklund et al.   BIOINFORMATICS

De novo protein structure generation from incomplete chemical shift assignments

(2008) Yang Shen et al.   JOURNAL OF BIOMOLECULAR NMR

NMR Solution Structure of the Integral Membrane Enzyme DsbB: Functional Insights into DsbB-Catalyzed Disulfide Bond Formation

(2008) Yunpeng Zhou et al.   MOLECULAR CELL

Consistent blind protein structure generation from NMR chemical shift data

(2008) Y. Shen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

De Novo High-Resolution Protein Structure Determination from Sparse Spin-Labeling EPR Data

(2008) Nathan Alexander et al.   STRUCTURE