Phylogenomics provides new insight into evolutionary relationships and genealogical discordance in the reef-building coral genusAcropora

Phylogenetic analysis of RAD-seq data: examining the influence of gene genealogy conflict on analysis of concatenated data

(2016) David M. Rivers et al.   CLADISTICS

Cryptic genetic divergence within threatened species of Acropora coral from the Indian and Pacific Oceans

(2016) Zoe T. Richards et al.   CONSERVATION GENETICS

Demographic history and asynchronous spawning shape genetic differentiation among populations of the hard coral Acropora tenuis in Western Australia

(2016) Natalie L. Rosser   MOLECULAR PHYLOGENETICS AND EVOLUTION

Biannual Spawning and Temporal Reproductive Isolation in Acropora Corals

(2016) James P. Gilmour et al.   PLoS One

How reticulated are species?

(2015) James Mallet et al.   BIOESSAYS

Changes in spawning time led to the speciation of the broadcast spawning corals Acropora digitifera and the cryptic species Acropora sp. 1 with similar gamete recognition systems

(2015) Shun Ohki et al.   CORAL REEFS

Irrational exuberance for resolved species trees

(2015) Matthew W. Hahn et al.   EVOLUTION

Unexpected cryptic species diversity in the widespread coralSeriatopora hystrixmasks spatial-genetic patterns of connectivity

(2015) Patricia A. Warner et al.   MOLECULAR ECOLOGY

Asynchronous spawning in sympatric populations of a hard coral reveals cryptic species and ancient genetic lineages

(2015) Natalie L. Rosser   MOLECULAR ECOLOGY

Evolution of Darwin’s finches and their beaks revealed by genome sequencing

(2015) Sangeet Lamichhaney et al.   NATURE

Introgressive hybridization facilitates adaptive divergence in a recent radiation of monkeyflowers

(2015) Sean Stankowski et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Short Tree, Long Tree, Right Tree, Wrong Tree: New Acquisition Bias Corrections for Inferring SNP Phylogenies

(2015) Adam D. Leaché et al.   SYSTEMATIC BIOLOGY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Genotyping-by-sequencing as a tool to infer phylogeny and ancestral hybridization: A case study in Carex (Cyperaceae)

(2014) Marcial Escudero et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Extensive introgression in a malaria vector species complex revealed by phylogenomics

(2014) M. C. Fontaine et al.   SCIENCE

Circadian Clocks in the Cnidaria: Environmental Entrainment, Molecular Regulation, and Organismal Outputs

(2013) Adam M. Reitzel et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular phylogenetics of geographically restricted Acropora species: Implications for threatened species conservation

(2013) Z.T. Richards et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Biannual coral spawning decreases at higher latitudes on Western Australian reefs

(2012) N. L. Rosser   CORAL REEFS

Assessing hidden species diversity in the coral Pocillopora damicornis from Eastern Australia

(2012) S. Schmidt-Roach et al.   CORAL REEFS

Extensive sympatry, cryptic diversity and introgression throughout the geographic distribution of two coral species complexes

(2012) JASON T. LADNER et al.   MOLECULAR ECOLOGY

The population genetic approach delineates the species boundary of reproductively isolated corymbose acroporid corals

(2012) Yuichi Nakajima et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Inferring Phylogenies from RAD Sequence Data

(2012) Benjamin E. R. Rubin et al.   PLoS One

The performance of the Congruence Among Distance Matrices (CADM) test in phylogenetic analysis

(2011) Véronique Campbell et al.   BMC EVOLUTIONARY BIOLOGY

RADSeq: next-generation population genetics

(2011) J. W. Davey et al.   Briefings in Functional Genomics

GENETIC, SPATIAL, AND TEMPORAL COMPONENTS OF PRECISE SPAWNING SYNCHRONY IN REEF BUILDING CORALS OF THE MONTASTRAEA ANNULARIS SPECIES COMPLEX

(2011) Don R. Levitan et al.   EVOLUTION

Twilight spectral dynamics and the coral reef invertebrate spawning response

(2011) A. M. Sweeney et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Applications of next-generation sequencing to phylogeography and phylogenetics

(2011) John E. McCormack et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Incongruence between morphotypes and genetically delimited species in the coral genus Stylophora: phenotypic plasticity, morphological convergence, morphological stasis or interspecific hybridization?

(2011) Jean-François Flot et al.   BMC ECOLOGY

Speciation genes in plants

(2010) Loren H. Rieseberg et al.   ANNALS OF BOTANY

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

A golden age for evolutionary genetics? Genomic studies of adaptation in natural populations

(2010) Nicola J. Nadeau et al.   TRENDS IN GENETICS

Coral spawn timing is a direct response to solar light cycles and is not an entrained circadian response

(2009) A. K. Brady et al.   CORAL REEFS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Natural selection in action during speciation

(2009) S. Via   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Some Rare Indo-Pacific Coral Species Are Probable Hybrids

(2008) Zoe T. Richards et al.   PLoS One