Interaction networks, ecological stability, and collective antibiotic tolerance in polymicrobial infections

Lotka-Volterra pairwise modeling fails to capture diverse pairwise microbial interactions

(2017) Babak Momeni et al.   eLife

Challenges in microbial ecology: building predictive understanding of community function and dynamics

(2016) Stefanie Widder et al.   ISME Journal

Oscillatory dynamics in a bacterial cross-protection mutualism

(2016) Eugene Anatoly Yurtsev et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity

(2016) Alexandra Zhernakova et al.   SCIENCE

Adapting Koch's postulates

(2016) A. L. Byrd et al.   SCIENCE

The Contribution of High-Order Metabolic Interactions to the Global Activity of a Four-Species Microbial Community

(2016) Xiaokan Guo et al.   PLoS Computational Biology

A comparison of monomicrobial versus polymicrobial Enterococcus faecalis bacteriuria in a French University Hospital

(2015) C. Fourcade et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Bacteriocin production augments niche competition by enterococci in the mammalian gastrointestinal tract

(2015) Sushma Kommineni et al.   NATURE

Counteraction of antibiotic production and degradation stabilizes microbial communities

(2015) Eric D. Kelsic et al.   NATURE

Collective antibiotic tolerance: mechanisms, dynamics and intervention

(2015) Hannah R Meredith et al.   Nature Chemical Biology

The biogeography of polymicrobial infection

(2015) Apollo Stacy et al.   NATURE REVIEWS MICROBIOLOGY

Urinary tract infections: epidemiology, mechanisms of infection and treatment options

(2015) Ana L. Flores-Mireles et al.   NATURE REVIEWS MICROBIOLOGY

Socially mediated induction and suppression of antibiosis during bacterial coexistence

(2015) Monica I. Abrudan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Long-term social dynamics drive loss of function in pathogenic bacteria

(2015) Sandra Breum Andersen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The ecology of the microbiome: Networks, competition, and stability

(2015) K. Z. Coyte et al.   SCIENCE

Preferential Use of Central Metabolism In Vivo Reveals a Nutritional Basis for Polymicrobial Infection

(2015) Christopher J. Alteri et al.   PLoS Pathogens

Collective antibiotic resistance: mechanisms and implications

(2014) Nicole M Vega et al.   CURRENT OPINION IN MICROBIOLOGY

Polybacterial human disease: the ills of social networking

(2014) Francesca L. Short et al.   TRENDS IN MICROBIOLOGY

Two-role model of an interaction network of free-living γ-proteobacteria from an oligotrophic environment

(2013) Eneas Aguirre-von-Wobeser et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial cheating drives the population dynamics of cooperative antibiotic resistance plasmids

(2013) Eugene A Yurtsev et al.   Molecular Systems Biology

A problem of persistence: still more questions than answers?

(2013) Nathalie Q. Balaban et al.   NATURE REVIEWS MICROBIOLOGY

The Human Urine Metabolome

(2013) Souhaila Bouatra et al.   PLoS One

Salmonella typhimurium intercepts Escherichia coli signaling to enhance antibiotic tolerance

(2013) N. M. Vega et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic Diversity and Fitness of E. coli Strains Recovered from the Intestinal and Urinary Tracts of Women with Recurrent Urinary Tract Infection

(2013) S. L. Chen et al.   Science Translational Medicine

Imaging Type VI Secretion-Mediated Bacterial Killing

(2013) Yannick R. Brunet et al.   Cell Reports

Polymicrobial Interactions: Impact on Pathogenesis and Human Disease

(2012) B. M. Peters et al.   CLINICAL MICROBIOLOGY REVIEWS

Competition, Not Cooperation, Dominates Interactions among Culturable Microbial Species

(2012) Kevin R. Foster et al.   CURRENT BIOLOGY

Antagonism influences assembly of a Bacillus guild in a local community and is depicted as a food-chain network

(2012) Rocío-Anaís Pérez-Gutiérrez et al.   ISME Journal

The Application of Ecological Theory Toward an Understanding of the Human Microbiome

(2012) E. K. Costello et al.   SCIENCE

Biogenic ammonia modifies antibiotic resistance at a distance in physically separated bacteria

(2011) Steve P. Bernier et al.   MOLECULAR MICROBIOLOGY

More closely related species are more ecologically similar in an experimental test

(2011) J. H. Burns et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structure and Evolution of Streptomyces Interaction Networks in Soil and In Silico

(2011) Kalin Vetsigian et al.   PLOS BIOLOGY

Persistence of Uropathogenic Escherichia coli in the Face of Multiple Antibiotics

(2010) M. G. Blango et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Increased human pathogenic potential of Escherichia coli from polymicrobial urinary tract infections in comparison to isolates from monomicrobial culture samples

(2010) G. Croxall et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Emergent cooperation in microbial metabolism

(2010) Edwin H Wintermute et al.   Molecular Systems Biology

Bacterial charity work leads to population-wide resistance

(2010) Henry H. Lee et al.   NATURE

Ecological interactions are evolutionarily conserved across the entire tree of life

(2010) José M. Gómez et al.   NATURE

Host–pathogen interactions in urinary tract infection

(2010) Greta R. Nielubowicz et al.   Nature Reviews Urology

Bacterial Adhesins in Host-Microbe Interactions

(2009) Kimberly A. Kline et al.   Cell Host & Microbe

Bacterial competition: surviving and thriving in the microbial jungle

(2009) Michael E. Hibbing et al.   NATURE REVIEWS MICROBIOLOGY

Microbial Communication, Cooperation and Cheating: Quorum Sensing Drives the Evolution of Cooperation in Bacteria

(2009) Tamás Czárán et al.   PLoS One

Bacterial Community Variation in Human Body Habitats Across Space and Time

(2009) E. K. Costello et al.   SCIENCE

Defined spatial structure stabilizes a synthetic multispecies bacterial community

(2008) H. J. Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The evolution of contact-dependent inhibition in non-growing populations of Escherichia coli

(2007) M. Lemonnier et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES