Graph-theoretical model of global human interactome reveals enhanced long-range communicability in cancer networks

Molecular mechanisms of epithelial–mesenchymal transition

(2014) Samy Lamouille et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Topological implications of negative curvature for biological and social networks

(2014) Réka Albert et al.   PHYSICAL REVIEW E

Analysis of the Robustness of Network-Based Disease-Gene Prioritization Methods Reveals Redundancy in the Human Interactome and Functional Diversity of Disease-Genes

(2014) Emre Guney et al.   PLoS One

Enhancing the Functional Content of Eukaryotic Protein Interaction Networks

(2014) Gaurav Pandey et al.   PLoS One

Randomness and preserved patterns in cancer network

(2014) Aparna Rai et al.   Scientific Reports

“Good Enough Solutions” and the Genetics of Complex Diseases

(2012) James N. Weiss et al.   CIRCULATION RESEARCH

Exploiting Protein-Protein Interaction Networks for Genome-Wide Disease-Gene Prioritization

(2012) Emre Guney et al.   PLoS One

Differential network entropy reveals cancer system hallmarks

(2012) James West et al.   Scientific Reports

Chapter 5: Network Biology Approach to Complex Diseases

(2012) Dong-Yeon Cho et al.   PLoS Computational Biology

Regulation patterns in signaling networks of cancer

(2011) Gunnar Schramm et al.   BMC Systems Biology

Prioritizing cancer-related genes with aberrant methylation based on a weighted protein-protein interaction network

(2011) Hui Liu et al.   BMC Systems Biology

Hallmarks of Cancer: The Next Generation

(2011) Douglas Hanahan et al.   CELL

Decoding the genome beyond sequencing: The new phase of genomic research

(2011) Henry H.Q. Heng et al.   GENOMICS

Dominating Biological Networks

(2011) Tijana Milenković et al.   PLoS One

Computational approaches for detecting protein complexes from protein interaction networks: a survey

(2010) Xiaoli Li et al.   BMC GENOMICS

Patterns of human gene expression variance show strong associations with signaling network hierarchy

(2010) Kakajan Komurov et al.   BMC Systems Biology

A Max-Flow-Based Approach to the Identification of Protein Complexes Using Protein Interaction and Microarray Data

(2010) Jianxing Feng et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Tumor heterogeneity: Causes and consequences

(2009) Andriy Marusyk et al.   BIOCHIMICA ET BIOPHYSICA ACTA-REVIEWS ON CANCER

Complex discovery from weighted PPI networks

(2009) Guimei Liu et al.   BIOINFORMATICS

Systems-level cancer gene identification from protein interaction network topology applied to melanogenesis-related functional genomics data

(2009) T. Milenkovic et al.   Journal of the Royal Society Interface

Dynamic modularity in protein interaction networks predicts breast cancer outcome

(2009) Ian W Taylor et al.   NATURE BIOTECHNOLOGY

Protein networks in disease

(2008) T. Ideker et al.   GENOME RESEARCH

Protein-protein interaction networks and biology—what's the connection?

(2008) Luke Hakes et al.   NATURE BIOTECHNOLOGY

Geometric Interpretation of Gene Coexpression Network Analysis

(2008) Steve Horvath et al.   PLoS Computational Biology