Identification of two types of GGAA-microsatellites and their roles in EWS/FLI binding and gene regulation in Ewing sarcoma
Published 2017 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Identification of two types of GGAA-microsatellites and their roles in EWS/FLI binding and gene regulation in Ewing sarcoma
Authors
Keywords
Gene expression, Ewing sarcoma, Sequence motif analysis, Transcription factors, Gene regulation, DNA transcription, Genomic libraries, Transcriptional control
Journal
PLoS One
Volume 12, Issue 11, Pages e0186275
Publisher
Public Library of Science (PLoS)
Online
2017-11-02
DOI
10.1371/journal.pone.0186275
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- What are super-enhancers?
- (2015) Sebastian Pott et al. NATURE GENETICS
- Functional, chemical genomic, and super-enhancer screening identify sensitivity to cyclin D1/CDK4 pathway inhibition in Ewing sarcoma
- (2015) Alyssa L. Kennedy et al. Oncotarget
- Epigenome Mapping Reveals Distinct Modes of Gene Regulation and Widespread Enhancer Reprogramming by the Oncogenic Fusion Protein EWS-FLI1
- (2015) Eleni M. Tomazou et al. Cell Reports
- EWS-FLI1 Utilizes Divergent Chromatin Remodeling Mechanisms to Directly Activate or Repress Enhancer Elements in Ewing Sarcoma
- (2014) Nicolò Riggi et al. CANCER CELL
- Clinical and Biochemical Function of Polymorphic NR0B1 GGAA-Microsatellites in Ewing Sarcoma: A Report from the Children's Oncology Group
- (2014) Michael J. Monument et al. PLoS One
- Absence of a simple code: how transcription factors read the genome
- (2014) Matthew Slattery et al. TRENDS IN BIOCHEMICAL SCIENCES
- Super-Enhancers in the Control of Cell Identity and Disease
- (2013) Denes Hnisz et al. CELL
- Ensembl 2014
- (2013) Paul Flicek et al. NUCLEIC ACIDS RESEARCH
- Software for Computing and Annotating Genomic Ranges
- (2013) Michael Lawrence et al. PLoS Computational Biology
- Identifying ChIP-seq enrichment using MACS
- (2012) Jianxing Feng et al. Nature Protocols
- Mechanism and relevance of EWS/FLI-mediated transcriptional repression in Ewing sarcoma
- (2012) S Sankar et al. ONCOGENE
- Microsatellites with Macro-Influence in Ewing Sarcoma
- (2012) Michael J. Monument et al. Genes
- Microsatellites are EWS/FLI response elements: Genomic "junk" is EWS/FLI's treasure
- (2011) Kunal Gangwal et al. CELL CYCLE
- ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data
- (2010) Lihua J Zhu et al. BMC BIOINFORMATICS
- Genome-wide analysis of ETS-family DNA-binding in vitro and in vivo
- (2010) Gong-Hong Wei et al. EMBO JOURNAL
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- The Oncogenic EWS-FLI1 Protein Binds In Vivo GGAA Microsatellite Sequences with Potential Transcriptional Activation Function
- (2009) Noëlle Guillon et al. PLoS One
- Regulation of the transcription factor Ets-1 by DNA-mediated homo-dimerization
- (2008) Ekaterina P Lamber et al. EMBO JOURNAL
- Microsatellites as EWS/FLI response elements in Ewing's sarcoma
- (2008) K. Gangwal et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started