BrEPS 2.0: Optimization of sequence pattern prediction for enzyme annotation

InterPro in 2017—beyond protein family and domain annotations

(2016) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

HAMAP in 2015: updates to the protein family classification and annotation system

(2014) Ivo Pedruzzi et al.   NUCLEIC ACIDS RESEARCH

The Structure–Function Linkage Database

(2013) Eyal Akiva et al.   NUCLEIC ACIDS RESEARCH

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

TIGRFAMs and Genome Properties in 2013

(2012) Daniel H. Haft et al.   NUCLEIC ACIDS RESEARCH

The PRINTS database: a fine-grained protein sequence annotation and analysis resource--its status in 2012

(2012) T. K. Attwood et al.   Database-The Journal of Biological Databases and Curation

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

BrEPS: a flexible and automatic protocol to compute enzyme-specific sequence profiles for functional annotation

(2010) C Bannert et al.   BMC BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

ExplorEnz: the primary source of the IUBMB enzyme list

(2008) A. G. McDonald et al.   NUCLEIC ACIDS RESEARCH