Comparative transcriptome analysis of flower heterosis in two soybean F1 hybrids by RNA-seq

Soybean Seed Development: Fatty Acid and Phytohormone Metabolism and Their Interactions

(2016) Quoc Thien Nguyen et al.   CURRENT GENOMICS

Global Transcriptome Analysis Reveals Differences in Gene Expression Patterns Between Nonhyperhydric and Hyperhydric Peach Leaves

(2016) Yakup Bakir et al.   Plant Genome

Transcriptome shock in an interspecific F1 triploid hybrid ofOryzarevealed by RNA sequencing

(2015) Ying Wu et al.   Journal of Integrative Plant Biology

Sequencing of plant genomes – a review

(2015) Mine TÜRKTAŞ et al.   Turkish Journal of Agriculture and Forestry

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

mRNA and Small RNA Transcriptomes Reveal Insights into Dynamic Homoeolog Regulation of Allopolyploid Heterosis in Nascent Hexaploid Wheat

(2014) A. Li et al.   PLANT CELL

Family-wide characterization of matrix metalloproteinases fromArabidopsis thalianareveals their distinct proteolytic activity and cleavage site specificity

(2013) Giada Marino et al.   BIOCHEMICAL JOURNAL

Transcriptome analysis of rice root heterosis by RNA-Seq

(2013) Rongrong Zhai et al.   BMC GENOMICS

Homoeolog expression bias and expression level dominance in allopolyploid cotton

(2012) M-J Yoo et al.   HEREDITY

Heterosis of Arabidopsis hybrids between C24 and Col is associated with increased photosynthesis capacity

(2012) R. Fujimoto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Global Analysis of Allele-Specific Expression in Arabidopsis thaliana

(2009) Xu Zhang et al.   GENETICS

A Yeast Hybrid Provides Insight into the Evolution of Gene Expression Regulation

(2009) I. Tirosh et al.   SCIENCE

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

A Genome-Wide Transcription Analysis Reveals a Close Correlation of Promoter INDEL Polymorphism and Heterotic Gene Expression in Rice Hybrids

(2008) Hui-Yong Zhang et al.   Molecular Plant

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Identification of Four Soybean Reference Genes for Gene Expression Normalization

(2008) M. Libault et al.   Plant Genome