Next generation sequencing reveals the antibiotic resistant variants in the genome of Pseudomonas aeruginosa

Identification of extensive drug resistant Pseudomonas aeruginosa strains: New clone ST1725 and high-risk clone ST233

(2017) Pamela Aguilar-Rodea et al.   PLoS One

Genomics and outbreak investigation: from sequence to consequence

(2016) Esther R Robinson et al.   Genome Medicine

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Pseudomonas aeruginosa clinical and environmental isolates constitute a single population with high phenotypic diversity

(2014) María-Victoria Grosso-Becerra et al.   BMC GENOMICS

Genome Analysis of Environmental and Clinical P. aeruginosa Isolates from Sequence Type-1146

(2014) David Sánchez et al.   PLoS One

Clinical and economic consequences of hospital-acquired resistant and multidrug-resistant Pseudomonas aeruginosa infections: a systematic review and meta-analysis

(2014) Dilip Nathwani et al.   Antimicrobial Resistance and Infection Control

Clusters of genetically similar isolates of Pseudomonas aeruginosa from multiple hospitals in the UK

(2013) K. Martin et al.   JOURNAL OF MEDICAL MICROBIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

(2011) Nabil-Fareed Alikhan et al.   BMC GENOMICS

Pneumonia Due to Pseudomonas aeruginosa

(2011) Shigeki Fujitani et al.   CHEST

The impact of multidrug resistance in healthcare-associated and nosocomial Gram-negative bacteraemia on mortality and length of stay: cohort study

(2011) D.C. Lye et al.   CLINICAL MICROBIOLOGY AND INFECTION

VFDB 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors

(2011) L. Chen et al.   NUCLEIC ACIDS RESEARCH

Phenotypic and Genome-Wide Analysis of an Antibiotic-Resistant Small Colony Variant (SCV) of Pseudomonas aeruginosa

(2011) Qing Wei et al.   PLoS One

High-throughput whole-genome sequencing to dissect the epidemiology of Acinetobacter baumannii isolates from a hospital outbreak

(2010) T. Lewis et al.   JOURNAL OF HOSPITAL INFECTION

Pseudomonas aeruginosaMicroevolution during Cystic Fibrosis Lung Infection Establishes Clones with Adapted Virulence

(2009) Alessandra Bragonzi et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Evaluation of a nine-locus variable-number tandem-repeat scheme for typing of Pseudomonas aeruginosa

(2009) J.F. Turton et al.   CLINICAL MICROBIOLOGY AND INFECTION

Antibacterial-Resistant Pseudomonas aeruginosa: Clinical Impact and Complex Regulation of Chromosomally Encoded Resistance Mechanisms

(2009) P. D. Lister et al.   CLINICAL MICROBIOLOGY REVIEWS

Clinical Challenges in Addressing Resistance to Antimicrobial Drugs in the Twenty-First Century

(2009) E J Septimus et al.   CLINICAL PHARMACOLOGY & THERAPEUTICS

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS