Systems genetics reveals a transcriptional network associated with susceptibility in the maize-grey leaf spot pathosystem

Whole-transcriptome analysis of differentially expressed genes in the ray florets and disc florets of Chrysanthemum morifolium

(2016) Hua Liu et al.   BMC GENOMICS

Combining powers of linkage and association mapping for precise dissection of QTL controlling resistance to gray leaf spot disease in maize (Zea mays L.)

(2015) Jafar Mammadov et al.   BMC GENOMICS

Genetical genomics of Populus leaf shape variation

(2015) Derek R. Drost et al.   BMC PLANT BIOLOGY

The F-box protein MAX2 contributes to resistance to bacterial phytopathogens in Arabidopsis thaliana

(2015) Maria Piisilä et al.   BMC PLANT BIOLOGY

Structural basis of JAZ repression of MYC transcription factors in jasmonate signalling

(2015) Feng Zhang et al.   NATURE

Invasion is sweet

(2015) Jan Schirawski   NEW PHYTOLOGIST

Transcriptional networks in plant immunity

(2015) Kenichi Tsuda et al.   NEW PHYTOLOGIST

Transcriptome and Metabolite Profiling of the Infection Cycle ofZymoseptoria triticion Wheat Reveals a Biphasic Interaction with Plant Immunity Involving Differential Pathogen Chromosomal Contributions and a Variation on the Hemibiotrophic Lifestyle Definition

(2015) Jason J. Rudd et al.   PLANT PHYSIOLOGY

The maize disease resistance geneHtn1against northern corn leaf blight encodes a wall-associated receptor-like kinase

(2015) Severine Hurni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene Networks in Plant Biology: Approaches in Reconstruction and Analysis

(2015) Yupeng Li et al.   TRENDS IN PLANT SCIENCE

Resistance to Gray Leaf Spot of Maize: Genetic Architecture and Mechanisms Elucidated through Nested Association Mapping and Near-Isogenic Line Analysis

(2015) Jacqueline M. Benson et al.   PLoS Genetics

Cullin-RING ubiquitin ligases in salicylic acid-mediated plant immune signaling

(2015) James J. Furniss et al.   Frontiers in Plant Science

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Mapping QTL conferring resistance in maize to gray leaf spot disease caused by Cercospora zeina

(2014) Dave K Berger et al.   BMC GENETICS

High-resolution mapping and characterization of qRgls2, a major quantitative trait locus involved in maize resistance to gray leaf spot

(2014) Ling Xu et al.   BMC PLANT BIOLOGY

An expression quantitative trait loci-guided co-expression analysis for constructing regulatory network using a rice recombinant inbred line population

(2014) Jia Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Ca2+signalling in plant immune response: from pattern recognition receptors to Ca2+decoding mechanisms

(2014) Heike Seybold et al.   NEW PHYTOLOGIST

Interaction of theArabidopsisGTPase RabA4c with Its Effector PMR4 Results in Complete Penetration Resistance to Powdery Mildew

(2014) Dorothea Ellinger et al.   PLANT CELL

Expression of a gene encoding a rice RING zinc-finger protein, OsRZFP34, enhances stomata opening

(2014) Kuo-Hsuan Hsu et al.   PLANT MOLECULAR BIOLOGY

Systems genetics: A paradigm to improve discovery of candidate genes and mechanisms underlying complex traits

(2014) F. Alex Feltus   PLANT SCIENCE

Systems Genetics of Environmental Response in the Mature Wheat Embryo

(2013) Jesse D. Munkvold et al.   GENETICS

Transcriptomic characterization of two majorFusariumresistance quantitative trait loci (QTLs),Fhb1andQfhs.ifa-5A, identifies novel candidate genes

(2013) Wolfgang Schweiger et al.   MOLECULAR PLANT PATHOLOGY

Systems genetics approaches to understand complex traits

(2013) Mete Civelek et al.   NATURE REVIEWS GENETICS

First Report of Gray Leaf Spot of Maize Caused by Cercospora zeina in China

(2013) K.-J. Liu et al.   PLANT DISEASE

Elevated Early Callose Deposition Results in Complete Penetration Resistance to Powdery Mildew in Arabidopsis

(2013) D. Ellinger et al.   PLANT PHYSIOLOGY

Mendelian and Non-Mendelian Regulation of Gene Expression in Maize

(2013) Lin Li et al.   PLoS Genetics

Bacterial Effector Activates Jasmonate Signaling by Directly Targeting JAZ Transcriptional Repressors

(2013) Shushu Jiang et al.   PLoS Pathogens

Organ specificity and transcriptional control of metabolic routes revealed by expression QTL profiling of source--sink tissues in a segregating potato population

(2012) Bjorn Kloosterman et al.   BMC PLANT BIOLOGY

Plant Defense Mechanisms Are Activated during Biotrophic and Necrotrophic Development of Colletotricum graminicola in Maize

(2012) W. A. Vargas et al.   PLANT PHYSIOLOGY

Specific Missense Alleles of the Arabidopsis Jasmonic Acid Co-Receptor COI1 Regulate Innate Immune Receptor Accumulation and Function

(2012) Yijian He et al.   PLoS Genetics

Genome-wide expression quantitative trait loci (eQTL) analysis in maize

(2011) Beth Holloway et al.   BMC GENOMICS

Quantitative phenotyping of grey leaf spot disease in maize using real-time PCR

(2011) J. Korsman et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Hexose Transporters of a Hemibiotrophic Plant Pathogen

(2011) Ulrike Lingner et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Maize microarray annotation database

(2011) Nanette Coetzer et al.   Plant Methods

Regulation of Pathogenesis by Light in Cercospora zeae-maydis: An Updated Perspective

(2011) Hun Kim et al.   Plant Pathology Journal

Multivariate analysis of maize disease resistances suggests a pleiotropic genetic basis and implicates a GST gene

(2011) R. J. Wisser et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identity, regulation, and activity of inducible diterpenoid phytoalexins in maize

(2011) E. A. Schmelz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

cDNA-AFLP-based genetical genomics in cotton fibers

(2011) Michel Claverie et al.   THEORETICAL AND APPLIED GENETICS

Quantitative and Qualitative Stem Rust Resistance Factors in Barley Are Associated with Transcriptional Suppression of Defense Regulons

(2011) Matthew J. Moscou et al.   PLoS Genetics

Quantitative Disease Resistance and Quantitative Resistance Loci in Breeding

(2010) Dina A. St.Clair   Annual Review of Phytopathology

Novel Functions ofStomatal Cytokinesis-Defective 1(SCD1) in Innate Immune Responses against Bacteria

(2010) David A. Korasick et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A global analysis of QTLs for expression variations in rice shoots at the early seedling stage

(2010) Jia Wang et al.   PLANT JOURNAL

An eQTL Analysis of Partial Resistance to Puccinia hordei in Barley

(2010) Xinwei Chen et al.   PLoS One

Network Analysis Identifies ELF3 as a QTL for the Shade Avoidance Response in Arabidopsis

(2010) José M. Jiménez-Gómez et al.   PLoS Genetics

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Cercospora zeina is the causal agent of grey leaf spot disease of maize in southern Africa

(2009) Barbara Meisel et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

QTLs for early vigor of tropical maize

(2009) S. Trachsel et al.   MOLECULAR BREEDING

Paternal Dominance of Trans-eQTL Influences Gene Expression Patterns in Maize Hybrids

(2009) R. A. Swanson-Wagner et al.   SCIENCE

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Exploiting regulatory variation to identify genes underlying quantitative resistance to the wheat stem rust pathogen Puccinia graminis f. sp. tritici in barley

(2008) Arnis Druka et al.   THEORETICAL AND APPLIED GENETICS

Identifying the molecular basis of QTLs: eQTLs add a new dimension

(2008) Bjarne G. Hansen et al.   TRENDS IN PLANT SCIENCE

Shades of gray: the world of quantitative disease resistance

(2008) Jesse A. Poland et al.   TRENDS IN PLANT SCIENCE

Gene expression quantitative trait locus analysis of 16 000 barley genes reveals a complex pattern of genome-wide transcriptional regulation

(2007) Elena Potokina et al.   PLANT JOURNAL