Validation of an updated Associative Transcriptomics platform for the polyploid crop species Brassica napus by dissection of the genetic architecture of erucic acid and tocopherol isoform variation in seeds

Root morphology and seed and leaf ionomic traits in a Brassica napus L. diversity panel show wide phenotypic variation and are characteristic of crop habit

(2016) C. L. Thomas et al.   BMC PLANT BIOLOGY

Genome sequence and genetic diversity of European ash trees

(2016) Elizabeth S. A. Sollars et al.   NATURE

Extensive homoeologous genome exchanges in allopolyploid crops revealed by mRNAseq-based visualization

(2016) Zhesi He et al.   PLANT BIOTECHNOLOGY JOURNAL

Molecular markers for tolerance of European ash (Fraxinus excelsior) to dieback disease identified using Associative Transcriptomics

(2016) Andrea L. Harper et al.   Scientific Reports

Doubling down on genomes: Polyploidy and crop plants

(2014) Simon Renny-Byfield et al.   AMERICAN JOURNAL OF BOTANY

Genome-Wide Association Study Dissects the Genetic Architecture of Seed Weight and Seed Quality in Rapeseed (Brassica napus L.)

(2014) F. Li et al.   DNA RESEARCH

Associative Transcriptomics Study Dissects the Genetic Architecture of Seed Glucosinolate Content in Brassica napus

(2014) G. Lu et al.   DNA RESEARCH

A Novel and Fast Approach for Population Structure Inference Using Kernel-PCA and Optimization

(2014) Andrei-Alin Popescu et al.   GENETICS

Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome

(2014) B. Chalhoub et al.   SCIENCE

Natural Variations and Genome-Wide Association Studies in Crop Plants

(2013) Xuehui Huang et al.   Annual Review of Plant Biology

Identification of genome-wide single nucleotide polymorphisms in allopolyploid crop Brassica napus

(2013) Shunmou Huang et al.   BMC GENOMICS

Intrinsic karyotype stability and gene copy number variations may have laid the foundation for tetraploid wheat formation

(2013) H. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

GAPIT: genome association and prediction integrated tool

(2012) Alexander E. Lipka et al.   BIOINFORMATICS

Expression of γ-tocopherol methyltransferase gene from Brassica napus increased α-tocopherol content in soybean seed

(2012) D. F. Chen et al.   BIOLOGIA PLANTARUM

Use of mRNA-seq to discriminate contributions to the transcriptome from the constituent genomes of the polyploid crop species Brassica napus

(2012) Janet Higgins et al.   BMC GENOMICS

Associative transcriptomics of traits in the polyploid crop species Brassica napus

(2012) Andrea L Harper et al.   NATURE BIOTECHNOLOGY

Transcriptional regulation of tocopherol biosynthesis in tomato

(2012) Leandro Quadrana et al.   PLANT MOLECULAR BIOLOGY

Genome-Wide Association Studies Identified Three Independent Polymorphisms Associated with α-Tocopherol Content in Maize Kernels

(2012) Qing Li et al.   PLoS One

Unraveling the Genetic Basis of Seed Tocopherol Content and Composition in Rapeseed (Brassica napus L.)

(2012) Xingxing Wang et al.   PLoS One

Chapter 11: Genome-Wide Association Studies

(2012) William S. Bush et al.   PLoS Computational Biology

Dissecting the genome of the polyploid crop oilseed rape by transcriptome sequencing

(2011) Ian Bancroft et al.   NATURE BIOTECHNOLOGY

Genome-wide association study of leaf architecture in the maize nested association mapping population

(2011) Feng Tian et al.   NATURE GENETICS

Patterns of molecular variation in a species-wide germplasm set of Brassica napus

(2011) Anja Bus et al.   THEORETICAL AND APPLIED GENETICS

Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa

(2011) Keyan Zhao et al.   Nature Communications

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

Association genetics in crop improvement

(2010) J Antoni Rafalski   CURRENT OPINION IN PLANT BIOLOGY

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

(2010) Susanna Atwell et al.   NATURE

Genome-wide association mapping to candidate polymorphism resolution in the unsequenced barley genome

(2010) J. Cockram et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Single nucleotide polymorphism (SNP) discovery in the polyploidBrassica napususing Solexa transcriptome sequencing

(2009) Martin Trick et al.   PLANT BIOTECHNOLOGY JOURNAL

Comparative Analysis between Homoeologous Genome Segments of Brassica napus and Its Progenitor Species Reveals Extensive Sequence-Level Divergence

(2009) F. Cheung et al.   PLANT CELL

Designing Genome-Wide Association Studies: Sample Size, Power, Imputation, and the Choice of Genotyping Chip

(2009) Chris C. A. Spencer et al.   PLoS Genetics

Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation

(2008) J. Z. Li et al.   SCIENCE

Association of gene-linked SSR markers to seed glucosinolate content in oilseed rape (Brassica napus ssp. napus)

(2008) M. Hasan et al.   THEORETICAL AND APPLIED GENETICS