Long-read sequencing improves assembly of Trichinella genomes 10-fold, revealing substantial synteny between lineages diverged over 7 million years

Phylogenomic and biogeographic reconstruction of the Trichinella complex

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The iPlant Collaborative: Cyberinfrastructure for Enabling Data to Discovery for the Life Sciences

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Mitochondrial genomes of Trichinella species and genotypes – a basis for diagnosis, and systematic and epidemiological explorations

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Whipworm genome and dual-species transcriptome analyses provide molecular insights into an intimate host-parasite interaction

(2014) Bernardo J Foth et al.   NATURE GENETICS

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(2012) M. Kearse et al.   BIOINFORMATICS

The draft genome of the parasitic nematode Trichinella spiralis

(2011) Makedonka Mitreva et al.   NATURE GENETICS

Next-generation sequencing of the Trichinella murrelli mitochondrial genome allows comprehensive comparison of its divergence from the principal agent of human trichinellosis, Trichinella spiralis

(2010) Kristen M. Webb et al.   INFECTION GENETICS AND EVOLUTION

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

r2cat: synteny plots and comparative assembly

(2009) P. Husemann et al.   BIOINFORMATICS

ABACAS: algorithm-based automatic contiguation of assembled sequences

(2009) S. Assefa et al.   BIOINFORMATICS

Old Parasites for a New World: The Future of Paleoparasitological Research. A Review

(2009) Katharina Dittmar   JOURNAL OF PARASITOLOGY

A macroevolutionary mosaic: episodic host-switching, geographical colonization and diversification in complex host-parasite systems

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