Cryptosporidium in fish: alternative sequencing approaches and analyses at multiple loci to resolve mixed infections

Cryptosporidium huwi n. sp. (Apicomplexa: Eimeriidae) from the guppy (Poecilia reticulata)

(2015) Una Ryan et al.   EXPERIMENTAL PARASITOLOGY

Genetic diversity of Cryptosporidium in fish at the 18S and actin loci and high levels of mixed infections

(2015) Rongchang Yang et al.   VETERINARY PARASITOLOGY

A new set of primers directed to 18S rRNA gene for molecular identification of Cryptosporidium spp. and their performance in the detection and differentiation of oocysts shed by synanthropic rodents

(2013) Sheila O.S. Silva et al.   EXPERIMENTAL PARASITOLOGY

Specific and quantitative detection and identification of Cryptosporidium hominis andC. parvum in clinical and environmental samples

(2013) Rongchang Yang et al.   EXPERIMENTAL PARASITOLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Identification of novel and zoonotic Cryptosporidium species in fish from Papua New Guinea

(2013) M. Koinari et al.   VETERINARY PARASITOLOGY

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Microbial 16S rRNA Ion Tag and community metagenome sequencing using the Ion Torrent (PGM) Platform

(2012) Andrew S. Whiteley et al.   JOURNAL OF MICROBIOLOGICAL METHODS

A fast, highly sensitive double-nested PCR-based method to screen fish immunobiomes

(2012) SÉBASTIEN BOUTIN et al.   Molecular Ecology Resources

Additional novel Cryptosporidium genotypes in ornamental fishes

(2012) M. Morine et al.   VETERINARY PARASITOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Gastric Cryptosporidiosis in Freshwater Angelfish (Pterophyllum Scalare)

(2011) Brian G. Murphy et al.   JOURNAL OF VETERINARY DIAGNOSTIC INVESTIGATION

Molecular Characterization of Cryptosporidium molnari Reveals a Distinct Piscine Clade

(2010) O. Palenzuela et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Nested PCR bias: a case study of Pseudomonas spp. in soil microcosms

(2010) Joong-Wook Park et al.   JOURNAL OF ENVIRONMENTAL MONITORING

Deep Sequencing Reveals Mixed Infection with 2009 Pandemic Influenza A (H1N1) Virus Strains and the Emergence of Oseltamivir Resistance

(2010) Elodie Ghedin et al.   JOURNAL OF INFECTIOUS DISEASES

Deep Sequencing Reveals Highly Complex Dynamics of Human Cytomegalovirus Genotypes in Transplant Patients over Time

(2010) I. Gorzer et al.   JOURNAL OF VIROLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Identification of novel Cryptosporidium species in aquarium fish

(2010) N. Zanguee et al.   VETERINARY PARASITOLOGY

Identification of novel and zoonotic Cryptosporidium species in marine fish

(2009) A. Reid et al.   VETERINARY PARASITOLOGY