TRAPP webserver: predicting protein binding site flexibility and detecting transient binding pockets
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Title
TRAPP webserver: predicting protein binding site flexibility and detecting transient binding pockets
Authors
Keywords
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Journal
NUCLEIC ACIDS RESEARCH
Volume 45, Issue W1, Pages W325-W330
Publisher
Oxford University Press (OUP)
Online
2017-04-13
DOI
10.1093/nar/gkx277
References
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Related references
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- (2011) Ian R. Craig et al. Journal of Chemical Information and Modeling
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